Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BC359_RS05490 Genome accession   NZ_CP016790
Coordinates   1057083..1058801 (+) Length   572 a.a.
NCBI ID   WP_025911489.1    Uniprot ID   A0A1N6N653
Organism   Priestia flexa strain KLBMP 4941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052083..1063801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC359_RS05465 (BC359_05455) - 1052259..1052492 (+) 234 WP_025911499.1 exodeoxyribonuclease VII small subunit -
  BC359_RS05470 (BC359_05460) - 1052495..1053388 (+) 894 WP_061784665.1 polyprenyl synthetase family protein -
  BC359_RS05475 (BC359_05465) dxs 1053705..1055603 (+) 1899 WP_076512153.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BC359_RS05480 (BC359_05470) - 1055600..1056430 (+) 831 WP_025911493.1 TlyA family RNA methyltransferase -
  BC359_RS05485 (BC359_05475) ahrC 1056617..1057066 (+) 450 WP_025911491.1 transcriptional regulator AhrC/ArgR -
  BC359_RS05490 (BC359_05480) recN 1057083..1058801 (+) 1719 WP_025911489.1 DNA repair protein RecN Machinery gene
  BC359_RS05495 (BC359_05485) spoIVB 1058988..1060265 (+) 1278 WP_078989289.1 SpoIVB peptidase -
  BC359_RS05500 (BC359_05490) spo0A 1060491..1061282 (+) 792 WP_025911485.1 sporulation transcription factor Spo0A -
  BC359_RS05505 (BC359_05495) - 1061681..1061929 (+) 249 WP_237071979.1 DUF2798 domain-containing protein -
  BC359_RS05510 (BC359_05500) - 1061963..1063534 (-) 1572 WP_078989291.1 L-lactate permease -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64299.83 Da        Isoelectric Point: 4.6409

>NTDB_id=192264 BC359_RS05490 WP_025911489.1 1057083..1058801(+) (recN) [Priestia flexa strain KLBMP 4941]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFVRHGTNRAEIEGLFLIEDEHPCYEKA
KQVGVEVEDGMVVLRRDITMNGKSICRINGKLVTLGILREVGQTLMDIHGQHEHQDLMNQDRHLILLDQYGGQKVEEALS
EYREVFATYTTLKKQLEQLTENEQQMAHRLDLIQFQLDEIKAADLQPNEDEQLMDERLKISNFEKIYTSLTDAYNALHGE
QRGLDWLGVAMNHAEEISNLEDTYGEISEVISSSFYQIEDVSYRIRQQLDLLEYDPKRLNFIESRLNEISHLKRKYGQSV
DEILEYAAQIEDEIDRIENRDTHVEKIKQKLSSVAEDLLVEAKNVSEVRKQLAAELTDSIHQELQELYMAKTIFNIVFEK
LPPNQADSELSGGSVKFTKDGIDSVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSG
RVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFISKQIKDDRTTTSVLPLNEEEKTKEIARMIAGAEITDLTQQHA
QELLGLAAKIKQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=192264 BC359_RS05490 WP_025911489.1 1057083..1058801(+) (recN) [Priestia flexa strain KLBMP 4941]
TTGTTAGCAGAACTATCAATCAAAAACTTTGCCATCATTGATGAGCTTTCAGTATCGTTTGAAAAAGGCTTAACAGTTTT
AACAGGTGAAACAGGAGCTGGTAAGTCAATTATTATTGATGCCATTCATCTGCTTGTTGGTGGACGCGGTTCATCCGAGT
TTGTAAGACATGGAACAAATCGAGCGGAAATCGAAGGGTTATTTCTAATTGAAGACGAGCACCCTTGCTATGAAAAAGCG
AAGCAGGTGGGAGTTGAAGTTGAAGATGGCATGGTGGTACTCAGACGAGATATTACCATGAATGGTAAGAGTATTTGTCG
TATTAATGGAAAGCTAGTCACGCTTGGCATTTTACGTGAAGTGGGTCAAACACTGATGGATATTCATGGTCAGCATGAGC
ACCAGGACTTAATGAACCAAGATCGACATCTAATTCTTCTTGACCAGTATGGAGGTCAGAAGGTTGAAGAAGCACTATCA
GAATATCGAGAAGTGTTTGCTACATATACAACGCTAAAGAAACAATTAGAACAATTAACAGAAAACGAACAGCAAATGGC
CCACCGCTTAGATTTAATTCAATTTCAGCTTGATGAAATAAAAGCAGCCGACCTTCAACCAAATGAAGATGAGCAACTGA
TGGATGAGCGCCTTAAAATTTCTAACTTTGAAAAGATTTATACGTCCTTAACGGATGCATATAACGCTCTTCATGGTGAG
CAAAGAGGACTAGATTGGCTAGGTGTAGCTATGAACCATGCAGAAGAAATTTCGAATTTAGAAGACACCTATGGCGAAAT
TTCAGAAGTCATATCATCAAGCTTTTATCAAATTGAAGATGTGTCTTATCGTATTCGCCAGCAGCTCGATTTATTAGAGT
ATGATCCAAAGCGTCTCAATTTTATTGAATCACGGCTAAATGAAATTAGTCATTTAAAGCGTAAATATGGTCAAAGCGTT
GATGAAATTCTAGAGTATGCAGCTCAAATTGAAGATGAAATTGATCGAATTGAGAACCGGGATACTCATGTTGAAAAAAT
TAAACAAAAACTGTCGAGCGTAGCAGAGGACTTGCTTGTTGAAGCGAAAAATGTTTCTGAGGTTAGAAAGCAGTTAGCTG
CGGAATTAACGGATAGTATTCATCAAGAGCTACAGGAGCTTTATATGGCTAAAACTATCTTTAATATCGTATTTGAAAAG
CTACCGCCAAACCAAGCTGATAGCGAACTGAGCGGTGGTTCTGTTAAGTTTACTAAGGATGGTATTGATTCAGTGGAGTT
TTATATTTCGACAAACCCAGGAGAGCCGCTAAAGCCACTTGCTAAAGTAGCTTCTGGTGGAGAGTTATCTCGTATTATGC
TTGCACTAAAAAGTATTTTCTCTAAGCATCAAGGTGTTACGTCCATTATTTTTGATGAAGTAGATACAGGAGTGAGCGGT
CGTGTCGCACAATCCATTGGTGAAAAAATTCACGCCATCTCTGTAGATTCCCAGGTGCTTTGTATTTCGCATCTTCCACA
GGTCGCTGCTATGGCGGATACACATTTGTTTATTTCAAAGCAAATCAAAGATGATCGCACTACAACATCTGTTTTACCGT
TAAACGAAGAAGAGAAAACAAAAGAAATTGCTCGCATGATTGCAGGAGCCGAAATAACCGATTTAACGCAGCAGCATGCC
CAAGAACTGTTAGGTCTAGCAGCAAAAATTAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6N653

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.955

100

0.621

Multiple sequence alignment