Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CA924_RS14850 Genome accession   NZ_CP021281
Coordinates   3254051..3255301 (+) Length   416 a.a.
NCBI ID   WP_015961780.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3249051..3260301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS14815 - 3249360..3249659 (-) 300 WP_011947628.1 metalloregulator ArsR/SmtB family transcription factor -
  CA924_RS14820 - 3249912..3250256 (-) 345 WP_014844809.1 hypothetical protein -
  CA924_RS14825 - 3250373..3251002 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  CA924_RS14830 - 3251212..3251706 (-) 495 WP_014844810.1 peptidylprolyl isomerase -
  CA924_RS14835 tgt 3251733..3252884 (-) 1152 WP_015961779.1 tRNA guanosine(34) transglycosylase Tgt -
  CA924_RS14840 - 3252946..3253437 (-) 492 WP_014844812.1 disulfide bond formation protein B -
  CA924_RS14845 - 3253434..3253862 (-) 429 WP_014842763.1 c-type cytochrome -
  CA924_RS14850 cqsA 3254051..3255301 (+) 1251 WP_015961780.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  CA924_RS14855 - 3255382..3256407 (-) 1026 WP_010948430.1 response regulator -
  CA924_RS14860 - 3256688..3257251 (+) 564 WP_015961781.1 HdeD family acid-resistance protein -
  CA924_RS14865 - 3257339..3258628 (-) 1290 WP_010948432.1 HAMP domain-containing sensor histidine kinase -
  CA924_RS17260 - 3258816..3258977 (+) 162 WP_021437214.1 hypothetical protein -
  CA924_RS14870 hemC 3259019..3259948 (+) 930 WP_015961782.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46089.57 Da        Isoelectric Point: 9.0911

>NTDB_id=192256 CA924_RS14850 WP_015961780.1 3254051..3255301(+) (cqsA) [Legionella pneumophila subsp. pneumophila strain Flint]
MSNTEYQTIDNETQYINGKEKHQNHAYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLSISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNAD
FLREALSYEGINIGSSGSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISANHEKSDLLRVIECL
AKLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=192256 CA924_RS14850 WP_015961780.1 3254051..3255301(+) (cqsA) [Legionella pneumophila subsp. pneumophila strain Flint]
ATGAGCAATACAGAATACCAAACAATTGATAACGAGACTCAATACATCAATGGAAAAGAAAAACATCAAAACCATGCTTA
TCCTGAGTACATCAATCATTCCATGGAAAAATATTACGAGGGGCGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAGTATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCCGCTGTATTTTTAAATAACAGCTCTTTTTT
ACTCAGCCAATGTGAAAAGAAATTCAGTTCCTTTTTAAATTATTCTGCGGCCCTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCTCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCAAGAGCCAAACCTATACCTTTTCTACATAATTCAGTCGACTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGGCTGACTATGCTGACATTG
CAAGAAAATTCAAATGTTTACTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGCTCGCAAGGCAAGGGAATGGTG
GCTAAACTGGGATTATCAAGCCAAATAGACATCATAACAGCAAGCCTGGCTAAAGCCTTATCAGGACGTGGAGGCATCAT
TACAGGAGATAGGCAACTTATAGAATATATCAGATATTCATCTCTGCCTTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTACTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCCTTATCATACGAAGGAATTAATATAGGAAGTAGTGGCTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGTGCGAATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCCTA
GCCAAACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.43

89.423

0.406