Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CA924_RS14125 Genome accession   NZ_CP021281
Coordinates   3097117..3097908 (-) Length   263 a.a.
NCBI ID   WP_014844714.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3092117..3102908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS14110 legS1 3093264..3094421 (-) 1158 WP_015961696.1 Dot/Icm T4SS effector LegS1 -
  CA924_RS14120 dacB 3095232..3097025 (-) 1794 WP_014844713.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  CA924_RS14125 spo0J 3097117..3097908 (-) 792 WP_014844714.1 ParB/RepB/Spo0J family partition protein Regulator
  CA924_RS14130 ceg33 3098025..3098528 (-) 504 WP_014844715.1 Dot/Icm T4SS effector Ceg33 -
  CA924_RS14135 - 3098701..3099450 (-) 750 WP_014842652.1 CPBP family glutamic-type intramembrane protease -
  CA924_RS14140 rsmB 3099447..3100730 (-) 1284 WP_015961697.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CA924_RS14145 fmt 3100727..3101671 (-) 945 WP_015961698.1 methionyl-tRNA formyltransferase -
  CA924_RS14150 def 3101668..3102180 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30113.25 Da        Isoelectric Point: 5.7320

>NTDB_id=192251 CA924_RS14125 WP_014844714.1 3097117..3097908(-) (spo0J) [Legionella pneumophila subsp. pneumophila strain Flint]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQIIGEEWSVRYLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=192251 CA924_RS14125 WP_014844714.1 3097117..3097908(-) (spo0J) [Legionella pneumophila subsp. pneumophila strain Flint]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCCTTGGTGGTAAGACCTATAGCAAAAGAGC
GATATGAAATTATTGCGGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATCGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCCTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTGTTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAGCAAGAAATGTTTGCTCACCAGATTATTGGAGAGGAATGGTCTGT
CAGATACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.692

98.859

0.373