Detailed information NTG0192218

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA924_RS06175
• Genome accession: NZ_CP021281
• Coordinates: 1329037..1330062 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain Flint
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1324037..1335062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA924_RS06145	-	1324469..1324786 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
CA924_RS06150	-	1324822..1325193 (+)	372	WP_011213591.1	protease inhibitor I42 family protein	-
CA924_RS06155	-	1325250..1326965 (-)	1716	WP_011213592.1	NAD-dependent malic enzyme	-
CA924_RS06160	-	1327045..1327428 (+)	384	WP_011213593.1	hypothetical protein	-
CA924_RS06165	surE	1327431..1328189 (+)	759	WP_011213594.1	5'/3'-nucleotidase SurE	-
CA924_RS06170	-	1328208..1328951 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
CA924_RS06175	rpoS	1329037..1330062 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
CA924_RS06180	hmgA	1330165..1331415 (-)	1251	WP_011213597.1	homogentisate 1,2-dioxygenase	-
CA924_RS06185	-	1331562..1332305 (+)	744	WP_011213598.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CA924_RS06190	ruvC	1332305..1332829 (+)	525	WP_011213599.1	crossover junction endodeoxyribonuclease RuvC	-
CA924_RS06195	ruvA	1332826..1333425 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
CA924_RS06200	-	1333475..1333795 (+)	321	WP_011213601.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=192218 CA924_RS06175 WP_011213596.1 1329037..1330062(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain Flint]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=192218 CA924_RS06175 WP_011213596.1 1329037..1330062(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain Flint]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATTGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGCTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548