Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BEN31_RS15755 Genome accession   NZ_CP016784
Coordinates   3094870..3095982 (-) Length   370 a.a.
NCBI ID   WP_066031459.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3089870..3100982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS15740 (BEN31_15740) gyrA 3089896..3092400 (-) 2505 WP_066031458.1 DNA gyrase subunit A -
  BEN31_RS15745 (BEN31_15745) gyrB 3092633..3094549 (-) 1917 WP_060597746.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BEN31_RS15750 (BEN31_15750) remB 3094607..3094852 (-) 246 WP_008360920.1 extracellular matrix regulator RemB -
  BEN31_RS15755 (BEN31_15755) recF 3094870..3095982 (-) 1113 WP_066031459.1 DNA replication/repair protein RecF Machinery gene
  BEN31_RS15760 (BEN31_15760) yaaA 3095999..3096214 (-) 216 WP_003215257.1 S4 domain-containing protein YaaA -
  BEN31_RS15765 (BEN31_15765) dnaN 3096365..3097501 (-) 1137 WP_034660670.1 DNA polymerase III subunit beta -
  BEN31_RS15770 (BEN31_15770) dnaA 3097698..3099038 (-) 1341 WP_034660669.1 chromosomal replication initiator protein DnaA -
  BEN31_RS15775 (BEN31_15775) rpmH 3099658..3099792 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  BEN31_RS15780 (BEN31_15780) rnpA 3099871..3100230 (+) 360 WP_034660668.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42561.61 Da        Isoelectric Point: 7.3662

>NTDB_id=192205 BEN31_RS15755 WP_066031459.1 3094870..3095982(-) (recF) [Bacillus pumilus strain PDSLzg-1]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTSIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=192205 BEN31_RS15755 WP_066031459.1 3094870..3095982(-) (recF) [Bacillus pumilus strain PDSLzg-1]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACTGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCGGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAGAAATGGGCGCAGCCGTTGCATTTTGGCA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACTTCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACACTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment