Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BEN31_RS15520 Genome accession   NZ_CP016784
Coordinates   3051694..3051984 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046694..3056984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS15505 (BEN31_15505) - 3046879..3048081 (-) 1203 WP_034665691.1 G5 and 3D domain-containing protein -
  BEN31_RS15510 (BEN31_15510) - 3048326..3049093 (-) 768 WP_034665688.1 TatD family hydrolase -
  BEN31_RS15515 (BEN31_15515) metG 3049176..3051173 (-) 1998 WP_034665685.1 methionine--tRNA ligase -
  BEN31_RS15520 (BEN31_15520) abrB 3051694..3051984 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BEN31_RS15525 (BEN31_15525) rsmI 3052030..3052908 (-) 879 WP_060595349.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BEN31_RS15530 (BEN31_15530) - 3052886..3053182 (-) 297 WP_060595348.1 GIY-YIG nuclease family protein -
  BEN31_RS15535 (BEN31_15535) - 3053169..3053912 (-) 744 WP_060595347.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BEN31_RS15540 (BEN31_15540) yabA 3053968..3054321 (-) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  BEN31_RS15545 (BEN31_15545) - 3054336..3055163 (-) 828 WP_012008643.1 stage 0 sporulation family protein -
  BEN31_RS15550 (BEN31_15550) holB 3055166..3056155 (-) 990 WP_034665677.1 DNA polymerase III subunit delta' -
  BEN31_RS15555 (BEN31_15555) - 3056167..3056607 (-) 441 WP_034665673.1 YaaR family protein -
  BEN31_RS15560 (BEN31_15560) - 3056620..3056949 (-) 330 WP_024425625.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=192203 BEN31_RS15520 WP_087975202.1 3051694..3051984(+) (abrB) [Bacillus pumilus strain PDSLzg-1]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=192203 BEN31_RS15520 WP_087975202.1 3051694..3051984(+) (abrB) [Bacillus pumilus strain PDSLzg-1]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment