Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CA924_RS00965 Genome accession   NZ_CP021281
Coordinates   212756..213565 (+) Length   269 a.a.
NCBI ID   WP_011212818.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 207756..218565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS00940 - 207776..208537 (+) 762 WP_126297581.1 hypothetical protein -
  CA924_RS00945 traA 208661..211300 (-) 2640 WP_011212814.1 Ti-type conjugative transfer relaxase TraA -
  CA924_RS00950 - 211549..211755 (+) 207 WP_011212815.1 hypothetical protein -
  CA924_RS00955 - 211742..212011 (+) 270 WP_011212816.1 conjugal transfer protein TraD -
  CA924_RS00960 - 212105..212752 (+) 648 WP_011212817.1 hypothetical protein -
  CA924_RS00965 comEC 212756..213565 (+) 810 WP_011212818.1 hypothetical protein Machinery gene
  CA924_RS00970 - 213592..214053 (-) 462 WP_011212819.1 nucleoside deaminase -
  CA924_RS00975 - 214046..215473 (-) 1428 WP_011212820.1 VUT family protein -
  CA924_RS00980 - 215466..215825 (-) 360 WP_011212821.1 hypothetical protein -
  CA924_RS00985 - 215842..216489 (-) 648 WP_011212822.1 LexA family transcriptional regulator -
  CA924_RS00990 - 216658..216897 (+) 240 WP_011212823.1 hypothetical protein -
  CA924_RS00995 - 216928..217134 (+) 207 WP_011212824.1 hypothetical protein -
  CA924_RS01000 - 217083..218291 (+) 1209 WP_011212825.1 site-specific integrase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30583.73 Da        Isoelectric Point: 7.2561

>NTDB_id=192199 CA924_RS00965 WP_011212818.1 212756..213565(+) (comEC) [Legionella pneumophila subsp. pneumophila strain Flint]
MKLQIFDVEHGACALLTCINGTRLMIDCGHNANSGWKPGSYLRSQGVTHLDMLAITNYDEDHVSGLPDLLEQVHVNWLWR
NPSVSATDIKNMKAKNGMGYGIESLVNILPTYKYTGWQPPEFSFVERRGFYAPYPTFVDTNNLSMAIHLNIAGINFLFSG
DLESGGWNTLLKDQSFRNVIANTDIFIAPHHGRESGIYPQIFEEYQCFPHYIIMSDKSHMYDTQKTLDYYSSKARGGFFR
GKHRRVLTTRKDGSITFNFNFLKGECLVA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=192199 CA924_RS00965 WP_011212818.1 212756..213565(+) (comEC) [Legionella pneumophila subsp. pneumophila strain Flint]
GTGAAATTACAAATTTTTGATGTAGAACATGGTGCATGCGCACTCTTAACATGCATTAATGGCACAAGACTAATGATTGA
CTGTGGACATAACGCTAATAGTGGCTGGAAACCAGGTTCTTACTTGCGCAGTCAAGGAGTAACCCATCTCGATATGTTAG
CCATAACTAATTACGATGAAGATCACGTGAGTGGATTACCTGATTTACTTGAGCAAGTACATGTTAATTGGTTATGGCGT
AATCCATCAGTTTCAGCAACAGATATAAAAAATATGAAAGCCAAAAATGGAATGGGATATGGGATTGAAAGTTTAGTAAA
TATTCTCCCGACATATAAATATACAGGATGGCAACCGCCTGAGTTTTCATTTGTTGAAAGACGGGGTTTTTATGCTCCTT
ACCCTACTTTTGTAGACACGAATAATCTAAGCATGGCCATTCATCTTAATATTGCAGGAATAAATTTTTTGTTTTCAGGC
GATTTAGAATCAGGAGGATGGAATACTCTGTTAAAAGATCAGAGCTTTCGGAATGTGATTGCGAACACAGATATTTTTAT
AGCACCCCATCATGGACGAGAAAGTGGGATTTATCCCCAAATTTTCGAAGAATATCAGTGTTTCCCTCACTATATTATAA
TGTCCGATAAAAGCCATATGTACGATACACAAAAAACTCTAGATTACTATTCTAGTAAAGCACGCGGTGGTTTTTTTAGG
GGGAAACATCGTCGAGTTTTAACGACAAGAAAGGATGGTTCAATAACCTTTAATTTTAATTTTTTAAAGGGGGAATGTCT
TGTAGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila str. Paris

100

100

1