Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BEN31_RS11750 Genome accession   NZ_CP016784
Coordinates   2248023..2248814 (-) Length   263 a.a.
NCBI ID   WP_060595806.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2243023..2253814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS11730 (BEN31_11730) - 2245562..2246545 (-) 984 WP_034665005.1 glycosyltransferase family 2 protein -
  BEN31_RS11735 (BEN31_11735) - 2246836..2247108 (-) 273 WP_034665009.1 YfhJ family protein -
  BEN31_RS11740 (BEN31_11740) - 2247223..2247372 (+) 150 WP_003217849.1 small, acid-soluble spore protein K -
  BEN31_RS19070 - 2247398..2247571 (+) 174 WP_003217811.1 YpzG family protein -
  BEN31_RS11745 (BEN31_11745) - 2247705..2248019 (-) 315 WP_034665012.1 YfhH family protein -
  BEN31_RS11750 (BEN31_11750) recX 2248023..2248814 (-) 792 WP_060595806.1 recombination regulator RecX Regulator
  BEN31_RS11755 (BEN31_11755) - 2248909..2249805 (+) 897 WP_066031144.1 TIGR01777 family oxidoreductase -
  BEN31_RS11760 (BEN31_11760) - 2249858..2249968 (+) 111 WP_017358836.1 YfhE family protein -
  BEN31_RS11765 (BEN31_11765) - 2250030..2250185 (+) 156 WP_034665021.1 YfhD family protein -
  BEN31_RS11770 (BEN31_11770) - 2250225..2250812 (-) 588 WP_060595825.1 nitroreductase -
  BEN31_RS11775 (BEN31_11775) - 2251086..2252342 (+) 1257 WP_066031145.1 transcriptional regulator -
  BEN31_RS11780 (BEN31_11780) - 2252379..2252846 (-) 468 WP_066031146.1 thiol-disulfide oxidoreductase DCC family protein -
  BEN31_RS11785 (BEN31_11785) - 2253183..2253731 (-) 549 WP_034665029.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30575.00 Da        Isoelectric Point: 6.6674

>NTDB_id=192198 BEN31_RS11750 WP_060595806.1 2248023..2248814(-) (recX) [Bacillus pumilus strain PDSLzg-1]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPDDLQLEE
AVNQVLKLVRKEKNRSAKEIEQRIKLQLQRKGFSFAIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=192198 BEN31_RS11750 WP_060595806.1 2248023..2248814(-) (recX) [Bacillus pumilus strain PDSLzg-1]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACAGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGACTTAAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATTGAAATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTG
ACCGATTATTTGACGAAAAAAGAAATTCCAGCGCCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTAAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGTTAAAGCTTAAAGGGATAGACGATGACACCATTGAACAAGCGCTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCCGTCAATCAGGTTCTCAAGCTTGTGAGAAAAGAAAAGAATCGTTCTGCAAAAGAGATCGAGCAGCGCATCAAGCTTCA
GCTTCAGCGAAAGGGATTTTCGTTTGCGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAGTTTTTATTCAGAAAAGGCTTTGATCTCGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.118

100

0.631

Multiple sequence alignment