Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   BEN31_RS09450 Genome accession   NZ_CP016784
Coordinates   1803312..1805414 (+) Length   700 a.a.
NCBI ID   WP_066030977.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798312..1810414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS09415 (BEN31_09415) - 1798614..1798802 (+) 189 WP_003211747.1 YkvS family protein -
  BEN31_RS09420 (BEN31_09420) - 1798926..1799144 (-) 219 WP_034662856.1 hypothetical protein -
  BEN31_RS09425 (BEN31_09425) queF 1799415..1799912 (-) 498 WP_003211403.1 preQ(1) synthase -
  BEN31_RS09430 (BEN31_09430) queE 1799928..1800659 (-) 732 WP_034662862.1 7-carboxy-7-deazaguanine synthase QueE -
  BEN31_RS09435 (BEN31_09435) - 1800652..1801032 (-) 381 WP_223250462.1 6-carboxytetrahydropterin synthase -
  BEN31_RS09440 (BEN31_09440) queC 1801093..1801749 (-) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  BEN31_RS09445 (BEN31_09445) - 1802025..1803068 (-) 1044 WP_066030976.1 hypothetical protein -
  BEN31_RS09450 (BEN31_09450) clpC 1803312..1805414 (+) 2103 WP_066030977.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  BEN31_RS09455 (BEN31_09455) motA 1805790..1806584 (+) 795 WP_034662877.1 flagellar motor stator protein MotA -
  BEN31_RS09460 (BEN31_09460) motB 1806577..1807341 (+) 765 WP_060596120.1 flagellar motor protein MotB -
  BEN31_RS09465 (BEN31_09465) - 1807371..1807826 (-) 456 WP_034662884.1 MarR family winged helix-turn-helix transcriptional regulator -
  BEN31_RS09470 (BEN31_09470) - 1808032..1809537 (+) 1506 WP_066030978.1 ATP-binding protein -
  BEN31_RS09475 (BEN31_09475) - 1809584..1809826 (-) 243 WP_034662891.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 78046.66 Da        Isoelectric Point: 5.0839

>NTDB_id=192183 BEN31_RS09450 WP_066030977.1 1803312..1805414(+) (clpC) [Bacillus pumilus strain PDSLzg-1]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSVEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLREIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDNEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=192183 BEN31_RS09450 WP_066030977.1 1803312..1805414(+) (clpC) [Bacillus pumilus strain PDSLzg-1]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGTAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAATTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCACTT
GAACGACGCTTCCAGCCCGTCATTGTGGATGAGCCAACACAAGATGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGAGAGAAATTGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGGGTGATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATTGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCACCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATAACG
AAATTGTAGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-685)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.504

100

0.596
  clpE Streptococcus mutans UA159

57.459

100

0.594
  clpE Streptococcus pneumoniae Rx1

55.525

100

0.574
  clpE Streptococcus pneumoniae D39

55.525

100

0.574
  clpE Streptococcus pneumoniae R6

55.525

100

0.574
  clpE Streptococcus pneumoniae TIGR4

55.525

100

0.574
  clpC Bacillus subtilis subsp. subtilis str. 168

53.433

95.714

0.511
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.222

92.571

0.437
  clpC Streptococcus thermophilus LMD-9

45.75

92.429

0.423
  clpC Streptococcus thermophilus LMG 18311

45.595

92.429

0.421
  clpC Streptococcus mutans UA159

43.865

93.143

0.409
  clpC Streptococcus pneumoniae TIGR4

44.795

90.571

0.406
  clpC Streptococcus pneumoniae Rx1

44.992

89.857

0.404
  clpC Streptococcus pneumoniae D39

44.992

89.857

0.404

Multiple sequence alignment