Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BEN31_RS09175 Genome accession   NZ_CP016784
Coordinates   1749633..1750214 (-) Length   193 a.a.
NCBI ID   WP_034662739.1    Uniprot ID   A0AAE3WHV4
Organism   Bacillus pumilus strain PDSLzg-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744633..1755214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS09145 (BEN31_09145) - 1744673..1745164 (-) 492 WP_060596151.1 molybdenum cofactor biosynthesis protein MoaE -
  BEN31_RS09150 (BEN31_09150) mobB 1745161..1745685 (-) 525 WP_034662725.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  BEN31_RS09155 (BEN31_09155) glp 1745667..1746944 (-) 1278 WP_060596150.1 gephyrin-like molybdotransferase Glp -
  BEN31_RS09160 (BEN31_09160) - 1746954..1747970 (-) 1017 WP_060596149.1 thiazole biosynthesis adenylyltransferase ThiF -
  BEN31_RS09165 (BEN31_09165) - 1748000..1748581 (-) 582 WP_066030963.1 molybdenum cofactor guanylyltransferase -
  BEN31_RS09170 (BEN31_09170) - 1748822..1749583 (+) 762 WP_231135464.1 sigmaE regulated sporulation protein -
  BEN31_RS09175 (BEN31_09175) rok 1749633..1750214 (-) 582 WP_034662739.1 hypothetical protein Regulator
  BEN31_RS09180 (BEN31_09180) - 1750696..1751154 (-) 459 WP_034662741.1 TlpA family protein disulfide reductase -
  BEN31_RS09185 (BEN31_09185) ahpA 1751237..1751779 (-) 543 WP_034662744.1 biofilm-specific peroxidase AhpA -
  BEN31_RS09190 (BEN31_09190) - 1752052..1752861 (+) 810 WP_066030964.1 mechanosensitive ion channel family protein -
  BEN31_RS09195 (BEN31_09195) - 1752888..1753130 (-) 243 WP_066030965.1 YkuS family protein -
  BEN31_RS09200 (BEN31_09200) - 1753181..1754311 (-) 1131 WP_060596145.1 N-acetyldiaminopimelate deacetylase -
  BEN31_RS09205 (BEN31_09205) dapD 1754396..1755106 (-) 711 WP_034662753.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21812.80 Da        Isoelectric Point: 9.7309

>NTDB_id=192181 BEN31_RS09175 WP_034662739.1 1749633..1750214(-) (rok) [Bacillus pumilus strain PDSLzg-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNPASSLGTGQLNGVPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=192181 BEN31_RS09175 WP_034662739.1 1749633..1750214(-) (rok) [Bacillus pumilus strain PDSLzg-1]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAACTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAGACGGATTCGCTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCGGCACAATCACAATCAAATCCTGCATCATCTTTAGGAACAGGACAGCTAAACGGTGTACCTGTAGGTATTCCTGAAGG
ATCTACTAGACGCAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

78.421

98.446

0.772

Multiple sequence alignment