Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA927_RS12450 Genome accession   NZ_CP021279
Coordinates   2778611..2779294 (+) Length   227 a.a.
NCBI ID   WP_027227518.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain F-4198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2773611..2784294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA927_RS12430 - 2773620..2775335 (+) 1716 WP_027227514.1 tetratricopeptide repeat protein -
  CA927_RS12435 - 2775464..2776852 (-) 1389 WP_027227515.1 phosphomannomutase/phosphoglucomutase -
  CA927_RS12440 dut 2776853..2777311 (-) 459 WP_027227516.1 dUTP diphosphatase -
  CA927_RS12445 coaBC 2777338..2778534 (-) 1197 WP_027227517.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA927_RS12450 radC 2778611..2779294 (+) 684 WP_027227518.1 DNA repair protein RadC Machinery gene
  CA927_RS12460 lepB 2779635..2783519 (+) 3885 WP_027227520.1 Dot/Icm T4SS GTPase-activating effector LepB -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25733.37 Da        Isoelectric Point: 6.6922

>NTDB_id=192180 CA927_RS12450 WP_027227518.1 2778611..2779294(+) (radC) [Legionella pneumophila subsp. fraseri strain F-4198]
MMFAQTAQQLDLREKLLTNGVQSLSDIELLAVFISSGNSKKSCLQLAYELTKHLGNLRNILNTDLQSFKSIQGLGEVRYA
QLQAAKEICHRSDFIHLQKEIQLTNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVHPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=192180 CA927_RS12450 WP_027227518.1 2778611..2779294(+) (radC) [Legionella pneumophila subsp. fraseri strain F-4198]
ATGATGTTTGCCCAAACAGCGCAACAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTGCAAAGCCTCTCTGATAT
CGAACTCTTAGCCGTTTTTATCAGTTCTGGTAACAGTAAAAAATCTTGCTTGCAATTAGCTTATGAGCTTACTAAACACT
TGGGAAATTTACGTAATATCCTCAATACTGATCTGCAAAGTTTTAAATCAATCCAGGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTTATTCATCTGCAAAAAGAAATACAGTTAACTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGATTGCGAGACTATAAAAATGAAACCTTTGCCGCACTCTTTCTGGATAATCAAC
ACCGAATCATTGCTTATGAAGAATTATTTTCAGGGACCATCAACACAGCAACAGTCCATCCCAGACCTATTGTAGAACGT
GTACTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.964

98.678

0.414

Multiple sequence alignment