Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BEN31_RS09070 Genome accession   NZ_CP016784
Coordinates   1729761..1730039 (-) Length   92 a.a.
NCBI ID   WP_034662686.1    Uniprot ID   A0AAE3WJG5
Organism   Bacillus pumilus strain PDSLzg-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1724761..1735039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS09050 (BEN31_09050) ade 1724766..1726496 (-) 1731 WP_066030957.1 adenine deaminase -
  BEN31_RS09055 (BEN31_09055) - 1726759..1727427 (-) 669 WP_034662681.1 potassium channel family protein -
  BEN31_RS09060 (BEN31_09060) - 1727465..1728301 (-) 837 WP_066031765.1 gamma-glutamylcyclotransferase -
  BEN31_RS09065 (BEN31_09065) - 1728306..1729616 (-) 1311 WP_034662683.1 ATP-binding protein -
  BEN31_RS09070 (BEN31_09070) abrB 1729761..1730039 (-) 279 WP_034662686.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BEN31_RS09075 (BEN31_09075) mreBH 1730316..1731323 (+) 1008 WP_060596160.1 rod-share determining protein MreBH -
  BEN31_RS19345 - 1731398..1731529 (+) 132 WP_003210922.1 protein YkpC -
  BEN31_RS09080 (BEN31_09080) - 1731636..1732868 (+) 1233 WP_060596159.1 aminopeptidase -
  BEN31_RS09085 (BEN31_09085) - 1733105..1734724 (-) 1620 WP_034662692.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=192180 BEN31_RS09070 WP_034662686.1 1729761..1730039(-) (abrB) [Bacillus pumilus strain PDSLzg-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=192180 BEN31_RS09070 WP_034662686.1 1729761..1730039(-) (abrB) [Bacillus pumilus strain PDSLzg-1]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACCAGCCAGAGGGCGTTT
GCCTCATGACTGGTGAGATTACATCGGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment