Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BEN31_RS07470 Genome accession   NZ_CP016784
Coordinates   1400529..1400909 (-) Length   126 a.a.
NCBI ID   WP_060596689.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1395529..1405909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS07435 (BEN31_07435) - 1396121..1396351 (-) 231 WP_034660771.1 DUF896 domain-containing protein -
  BEN31_RS07440 (BEN31_07440) - 1396421..1397068 (-) 648 WP_003211322.1 recombinase family protein -
  BEN31_RS07445 (BEN31_07445) yneA 1397086..1397397 (-) 312 WP_003211955.1 cell division suppressor protein YneA -
  BEN31_RS07450 (BEN31_07450) lexA 1397557..1398177 (+) 621 WP_003212311.1 transcriptional repressor LexA -
  BEN31_RS07455 (BEN31_07455) - 1398225..1398662 (-) 438 WP_034660769.1 hypothetical protein -
  BEN31_RS07460 (BEN31_07460) - 1398957..1399499 (+) 543 WP_034660768.1 IseA DL-endopeptidase inhibitor family protein -
  BEN31_RS07465 (BEN31_07465) - 1399533..1400381 (-) 849 WP_066030856.1 STAS domain-containing protein -
  BEN31_RS07470 (BEN31_07470) nucA/comI 1400529..1400909 (-) 381 WP_060596689.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BEN31_RS07475 (BEN31_07475) - 1401178..1402086 (-) 909 WP_066030857.1 trypsin-like serine peptidase -
  BEN31_RS07480 (BEN31_07480) - 1402279..1405422 (-) 3144 WP_066030858.1 bifunctional cytochrome P450/NADPH--P450 reductase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13796.47 Da        Isoelectric Point: 8.4984

>NTDB_id=192175 BEN31_RS07470 WP_060596689.1 1400529..1400909(-) (nucA/comI) [Bacillus pumilus strain PDSLzg-1]
MGTLLGGFGEKHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISSYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=192175 BEN31_RS07470 WP_060596689.1 1400529..1400909(-) (nucA/comI) [Bacillus pumilus strain PDSLzg-1]
ATGGGCACGTTGTTAGGTGGATTTGGGGAGAAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGCCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACTAAACCTGGCTTTGACCGGGATGAGTGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGTGCGAGTGTTCAATATGTCAGCCCATCTGATAATAGGGGAGCAGGCTCATG
GGTTGGACACCAGATTAGCAGTTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment