Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BEN31_RS06120 Genome accession   NZ_CP016784
Coordinates   1137292..1137903 (-) Length   203 a.a.
NCBI ID   WP_060596723.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132292..1142903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS06100 (BEN31_06100) - 1132614..1133318 (+) 705 WP_034661036.1 DnaD domain-containing protein -
  BEN31_RS06105 (BEN31_06105) nth 1133336..1133998 (+) 663 WP_034661035.1 endonuclease III -
  BEN31_RS06110 (BEN31_06110) - 1133995..1134504 (+) 510 WP_034661033.1 YpoC family protein -
  BEN31_RS06115 (BEN31_06115) - 1134540..1137248 (-) 2709 WP_066030738.1 PBP1A family penicillin-binding protein -
  BEN31_RS06120 (BEN31_06120) recU 1137292..1137903 (-) 612 WP_060596723.1 Holliday junction resolvase RecU Machinery gene
  BEN31_RS06125 (BEN31_06125) - 1137950..1138906 (+) 957 WP_060596722.1 DUF2515 domain-containing protein -
  BEN31_RS06130 (BEN31_06130) sspM 1138930..1139034 (-) 105 WP_066030739.1 acid-soluble spore protein SspM -
  BEN31_RS06135 (BEN31_06135) - 1139231..1139464 (+) 234 WP_223250487.1 DUF5446 family protein -
  BEN31_RS06140 (BEN31_06140) - 1139523..1139894 (+) 372 WP_034661025.1 YppE family protein -
  BEN31_RS06145 (BEN31_06145) - 1140002..1140454 (+) 453 WP_060596720.1 YppG family protein -
  BEN31_RS06150 (BEN31_06150) - 1140475..1140894 (-) 420 WP_060596719.1 Hsp20/alpha crystallin family protein -
  BEN31_RS06155 (BEN31_06155) - 1141062..1141568 (+) 507 WP_060596718.1 PTS glucose transporter subunit IIA -
  BEN31_RS06160 (BEN31_06160) - 1141622..1142740 (-) 1119 WP_223250492.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23338.36 Da        Isoelectric Point: 8.6133

>NTDB_id=192174 BEN31_RS06120 WP_060596723.1 1137292..1137903(-) (recU) [Bacillus pumilus strain PDSLzg-1]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=192174 BEN31_RS06120 WP_060596723.1 1137292..1137903(-) (recU) [Bacillus pumilus strain PDSLzg-1]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAGATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTTATCAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTTCACGATCATCAAATTGAGCATATGAAACAGGTAGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGTCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGCAG
CAAAACGGCCGGAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment