Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA920_RS12745 Genome accession   NZ_CP021269
Coordinates   2803754..2804437 (+) Length   227 a.a.
NCBI ID   WP_062724736.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Bellingham     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2798754..2809437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA920_RS12730 - 2800607..2801995 (-) 1389 WP_027265358.1 phosphomannomutase/phosphoglucomutase -
  CA920_RS12735 dut 2801996..2802454 (-) 459 WP_014842515.1 dUTP diphosphatase -
  CA920_RS12740 coaBC 2802481..2803677 (-) 1197 WP_027265359.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA920_RS12745 radC 2803754..2804437 (+) 684 WP_062724736.1 DNA repair protein RadC Machinery gene
  CA920_RS12755 lepB 2804789..2808673 (+) 3885 WP_027224293.1 Dot/Icm T4SS GTPase-activating effector LepB -
  CA920_RS12760 thpR 2808798..2809361 (-) 564 WP_015961643.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25748.48 Da        Isoelectric Point: 7.5393

>NTDB_id=192041 CA920_RS12745 WP_062724736.1 2803754..2804437(+) (radC) [Legionella pneumophila subsp. pneumophila strain Bellingham]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITKRIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=192041 CA920_RS12745 WP_062724736.1 2803754..2804437(+) (radC) [Legionella pneumophila subsp. pneumophila strain Bellingham]
ATGATGGTTGCCCATACAGCGCAACAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGGAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTCATCTGCAAAAAGAAATCCGGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAGCGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAAAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGAGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.578

96.035

0.419