Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CfB38_RS16395 Genome accession   NZ_CP016762
Coordinates   3286460..3287074 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain B38     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3281460..3292074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CfB38_RS16380 (CfB38_3250) helD 3281684..3283738 (-) 2055 WP_061548790.1 DNA helicase IV -
  CfB38_RS16385 (CfB38_3251) - 3283864..3284310 (+) 447 WP_003035892.1 YccF domain-containing protein -
  CfB38_RS16390 (CfB38_3252) yccS 3284329..3286482 (+) 2154 WP_032939270.1 YccS family putative transporter -
  CfB38_RS16395 (CfB38_3253) sxy/tfoX 3286460..3287074 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  CfB38_RS16400 (CfB38_3254) sulA 3287292..3287801 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  CfB38_RS16405 (CfB38_3255) ompA 3288159..3289217 (+) 1059 WP_003836839.1 porin OmpA -
  CfB38_RS16410 (CfB38_3256) matP 3289306..3289758 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  CfB38_RS16415 (CfB38_3257) - 3289944..3291704 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=192007 CfB38_RS16395 WP_003035889.1 3286460..3287074(-) (sxy/tfoX) [Citrobacter freundii strain B38]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=192007 CfB38_RS16395 WP_003035889.1 3286460..3287074(-) (sxy/tfoX) [Citrobacter freundii strain B38]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGCG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment