Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABE41_RS16960 Genome accession   NZ_CP016761
Coordinates   3306205..3306687 (-) Length   160 a.a.
NCBI ID   WP_156774302.1    Uniprot ID   -
Organism   Fictibacillus arsenicus strain G25-54     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3301205..3311687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE41_RS16925 (ABE41_016925) fliW 3301372..3301815 (-) 444 WP_066292864.1 flagellar assembly protein FliW -
  ABE41_RS16930 (ABE41_016930) - 3301821..3302402 (-) 582 WP_066292868.1 DUF6470 family protein -
  ABE41_RS16935 (ABE41_016935) flgL 3302470..3303366 (-) 897 WP_066292871.1 flagellar hook-associated protein FlgL -
  ABE41_RS16940 (ABE41_016940) flgK 3303377..3304879 (-) 1503 WP_066292874.1 flagellar hook-associated protein FlgK -
  ABE41_RS16945 (ABE41_016945) - 3304900..3305355 (-) 456 WP_066292877.1 flagellar protein FlgN -
  ABE41_RS16950 (ABE41_016950) flgM 3305365..3305631 (-) 267 WP_066292880.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABE41_RS16955 (ABE41_016955) - 3305729..3306124 (-) 396 WP_066294936.1 TIGR03826 family flagellar region protein -
  ABE41_RS16960 (ABE41_016960) comFC 3306205..3306687 (-) 483 WP_156774302.1 ComF family protein Machinery gene
  ABE41_RS16965 (ABE41_016965) - 3306912..3308408 (-) 1497 WP_066292889.1 DEAD/DEAH box helicase -
  ABE41_RS16970 (ABE41_016970) - 3308457..3309305 (-) 849 WP_066292893.1 DegV family protein -
  ABE41_RS16975 (ABE41_016975) - 3309444..3310367 (-) 924 WP_066292896.1 ROK family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18277.03 Da        Isoelectric Point: 10.3519

>NTDB_id=191982 ABE41_RS16960 WP_156774302.1 3306205..3306687(-) (comFC) [Fictibacillus arsenicus strain G25-54]
MAGVLQQNRSLYVYNDFLKEVISKIKYRGDAELVKGFYPVMRSKLKGISGDTILVPIPLSNERHYERRFNQADIIARGFN
RDVHNLLERNAHEEKQSKKNRLERMKKKDNPFIVIDNNSIRGHSVLLIDDVYTTGSTLRYAAKVLIEAGAISVSSITLGR

Nucleotide


Download         Length: 483 bp        

>NTDB_id=191982 ABE41_RS16960 WP_156774302.1 3306205..3306687(-) (comFC) [Fictibacillus arsenicus strain G25-54]
TTGGCAGGAGTCCTGCAGCAAAATCGGTCACTTTATGTCTATAACGATTTTTTAAAAGAAGTTATTTCAAAGATAAAGTA
TCGCGGTGATGCAGAATTGGTGAAGGGCTTCTATCCAGTTATGCGCTCTAAGCTAAAGGGTATTTCCGGAGATACAATTC
TAGTACCAATTCCTCTTAGTAATGAGCGACACTATGAAAGAAGATTCAATCAAGCGGACATAATCGCACGAGGTTTTAAT
AGAGATGTTCATAATTTATTAGAGAGAAATGCTCATGAAGAGAAACAGAGTAAAAAGAATCGTCTTGAGAGAATGAAGAA
AAAGGACAACCCCTTTATAGTAATAGATAATAATTCAATAAGAGGTCATTCCGTTTTGTTAATTGACGATGTTTACACAA
CCGGCAGTACATTGCGATATGCGGCTAAAGTCCTGATAGAAGCTGGAGCCATAAGTGTTTCTTCCATTACATTAGGAAGG
TGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

47.531

100

0.481
  comFC/cflB Streptococcus mitis SK321

38.608

98.75

0.381
  comFC/cflB Streptococcus mitis NCTC 12261

37.342

98.75

0.369

Multiple sequence alignment