Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABE41_RS13630 Genome accession   NZ_CP016761
Coordinates   2630609..2632960 (-) Length   783 a.a.
NCBI ID   WP_066291299.1    Uniprot ID   A0A1B1Z6F4
Organism   Fictibacillus arsenicus strain G25-54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2625609..2637960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE41_RS21265 - 2627028..2627201 (-) 174 WP_171978763.1 hypothetical protein -
  ABE41_RS13615 (ABE41_013615) dtd 2627270..2627713 (-) 444 WP_066291293.1 D-aminoacyl-tRNA deacylase -
  ABE41_RS13620 (ABE41_013620) - 2627739..2629922 (-) 2184 WP_066291296.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABE41_RS13625 (ABE41_013625) - 2630076..2630588 (-) 513 WP_066291297.1 adenine phosphoribosyltransferase -
  ABE41_RS13630 (ABE41_013630) recJ 2630609..2632960 (-) 2352 WP_066291299.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABE41_RS13635 (ABE41_013635) secDF 2633033..2635247 (-) 2215 Protein_2705 protein translocase subunit SecDF -
  ABE41_RS13640 (ABE41_013640) - 2635764..2636015 (-) 252 WP_066291301.1 post-transcriptional regulator -
  ABE41_RS13645 (ABE41_013645) spoVB 2636113..2637663 (+) 1551 WP_083207805.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 87719.22 Da        Isoelectric Point: 4.8438

>NTDB_id=191975 ABE41_RS13630 WP_066291299.1 2630609..2632960(-) (recJ) [Fictibacillus arsenicus strain G25-54]
MLEPRTRWKIQETSEEKAKWLSQELDIPLLIANLLAIRGIDSLEKAQAFLKIDTNQFHDPFLLDGMKESVDRIHKAVESN
EKILIFGDYDADGVSSTTVMYYALKELDADFDYYIPNRFTEGYGPNEPALRKAKEDGYTLVVTVDTGISAVHEAAVAKEI
GLDFIITDHHEAPPVLPDAYSIINPKKPGCTYPFSGLAGVGVAFKVAHALHGNPPMHLLDYACIGTIADLVPLVDENRII
AKLGIEALSKTDKIGLQELLKVAGLYEKELTAEDVGFAVGPRVNAAGRLGSAMPVVELFTSNDREQSAMLAEEIDSVNKE
RQAIVNEITKEAIAMVEERFPPEENEVLVLAKEGWNPGVIGIVASRLVEKFYRPTIVLCLDQEKGTAKGSARSIQGFDMF
ENLSESRDILPHFGGHPMAAGMTLALDDVGILRERLVKQAKEILKPEDFLPVTMIDLTASLNEISLDTVEMLSTLAPFGI
GNPSPRVLIDQVPIREMKKIGSQSNHLKLQVGNGEMSVLDCIGFQKGNLLDEMTPYSILSLVGQIQLNEWNGYRKPQMLL
EDLSVSHFQLFDYRGLKDAGKRLKDLPKAKTQYITFNDNTLTELGLESLSSQTINGKELAELPNDSFQNKYIVFLDVPYS
LAEFAEILEKKGEPARIYAVFHQSTDHFFTTLPTREHFKWYYGFLAKRKKFDVQKDGTELARWKGWSKKTIDFMSQVFFE
LDFVTIDDGVITINSEPGKRELDSSETYQKKFEQADIENRLVYSSYHSLKSWFAEQARPKASL

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=191975 ABE41_RS13630 WP_066291299.1 2630609..2632960(-) (recJ) [Fictibacillus arsenicus strain G25-54]
ATGCTGGAGCCAAGAACGAGGTGGAAGATTCAAGAAACTTCGGAAGAAAAGGCAAAATGGTTGTCGCAAGAATTGGATAT
TCCTCTATTGATTGCAAATCTATTAGCGATACGAGGAATAGATTCTTTAGAGAAAGCTCAAGCTTTTTTAAAAATAGATA
CAAATCAATTTCATGATCCATTTTTATTAGATGGCATGAAAGAGAGTGTTGATCGGATACATAAAGCGGTTGAATCGAAT
GAAAAGATTCTTATTTTTGGTGACTATGATGCAGACGGAGTAAGCAGTACAACGGTTATGTATTATGCACTTAAAGAATT
AGATGCAGATTTCGATTATTATATTCCAAACCGGTTCACTGAAGGCTATGGTCCAAATGAGCCAGCGTTAAGAAAAGCGA
AGGAAGACGGATATACACTTGTGGTTACAGTGGATACTGGAATTTCAGCTGTTCATGAAGCAGCAGTTGCAAAAGAGATT
GGGCTTGATTTCATTATTACTGACCATCACGAGGCCCCGCCTGTACTGCCAGACGCCTATAGCATCATCAACCCTAAAAA
ACCTGGATGTACATATCCATTTTCTGGTCTTGCAGGTGTTGGCGTTGCGTTTAAAGTAGCTCATGCATTACATGGAAACC
CGCCAATGCACTTGCTAGATTATGCTTGTATAGGAACAATTGCAGATCTTGTTCCTTTGGTAGATGAAAATAGAATCATA
GCTAAGCTTGGAATAGAAGCTTTATCAAAAACAGACAAAATAGGCTTGCAGGAACTTTTAAAAGTTGCAGGGCTTTATGA
AAAAGAATTAACAGCAGAAGATGTTGGTTTTGCTGTTGGTCCTCGAGTGAATGCTGCAGGCAGACTCGGATCAGCGATGC
CGGTAGTTGAATTGTTTACTTCAAATGACCGTGAGCAATCAGCCATGCTCGCTGAAGAGATCGATTCTGTTAATAAAGAA
CGCCAGGCGATCGTAAATGAAATAACGAAAGAAGCAATTGCCATGGTAGAAGAGCGTTTTCCTCCTGAAGAGAATGAAGT
GCTTGTTCTTGCGAAAGAAGGCTGGAATCCAGGGGTAATCGGTATTGTTGCTTCGCGTCTAGTAGAAAAATTTTACCGGC
CGACCATCGTGTTGTGTTTAGACCAGGAAAAAGGAACGGCAAAAGGGTCAGCACGAAGCATACAAGGCTTTGATATGTTT
GAAAATCTTTCTGAGTCCCGCGACATCCTTCCTCACTTTGGAGGACATCCGATGGCAGCAGGTATGACATTGGCACTTGA
TGATGTTGGCATTCTCAGAGAGCGGTTAGTAAAGCAGGCGAAAGAAATTCTAAAACCAGAAGATTTCTTGCCAGTGACGA
TGATCGACCTAACAGCTTCTTTAAATGAGATTTCTTTAGATACGGTGGAAATGCTTAGTACGCTGGCTCCTTTTGGTATT
GGAAATCCTTCACCGCGGGTGCTTATTGATCAAGTGCCGATCCGGGAGATGAAAAAAATAGGAAGTCAGTCTAACCATCT
GAAATTACAAGTTGGAAATGGCGAGATGTCTGTCCTGGATTGTATCGGATTTCAAAAAGGCAATTTACTTGATGAGATGA
CGCCTTACTCCATACTTTCACTTGTTGGTCAAATACAGCTTAATGAATGGAACGGATATAGAAAACCTCAAATGCTGCTG
GAAGATCTTTCGGTTTCACATTTTCAGCTGTTTGATTATCGCGGTTTAAAAGATGCAGGAAAAAGGCTGAAGGATCTTCC
AAAAGCAAAAACACAATATATAACATTTAACGATAATACTCTGACAGAACTGGGATTGGAGAGCTTGTCTTCGCAAACAA
TAAATGGAAAAGAATTAGCAGAACTCCCAAATGACAGTTTTCAAAATAAGTATATTGTCTTTTTAGATGTTCCTTACTCA
CTTGCGGAGTTTGCTGAAATACTTGAAAAAAAAGGTGAACCTGCTAGGATCTATGCCGTTTTTCACCAAAGCACAGATCA
CTTTTTTACAACATTGCCGACAAGAGAGCATTTTAAATGGTACTACGGTTTCTTGGCTAAAAGAAAAAAATTCGATGTTC
AGAAAGATGGTACAGAACTGGCAAGATGGAAAGGCTGGTCTAAAAAAACAATAGATTTTATGTCACAGGTGTTTTTTGAG
CTGGATTTTGTTACAATAGACGATGGTGTAATTACAATAAATAGTGAACCAGGTAAAAGAGAACTTGATAGCTCTGAAAC
TTATCAGAAAAAGTTTGAACAGGCAGATATAGAAAATCGGCTCGTTTATTCTTCCTATCATTCATTAAAAAGCTGGTTTG
CAGAACAAGCTCGGCCAAAGGCGAGTTTGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-773)

RecJ OB domain (RecJ_OB)

(455-562)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1Z6F4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.613

98.978

0.511

Multiple sequence alignment