Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA922_RS13065 Genome accession   NZ_CP021268
Coordinates   2856700..2857383 (+) Length   227 a.a.
NCBI ID   WP_014844635.1    Uniprot ID   Q5X240
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2851700..2862383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS13045 - 2851714..2853447 (+) 1734 WP_027226024.1 tetratricopeptide repeat protein -
  CA922_RS13050 - 2853553..2854941 (-) 1389 WP_042754491.1 phosphomannomutase/phosphoglucomutase -
  CA922_RS13055 dut 2854942..2855400 (-) 459 WP_014844633.1 dUTP diphosphatase -
  CA922_RS13060 coaBC 2855427..2856623 (-) 1197 WP_014844634.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA922_RS13065 radC 2856700..2857383 (+) 684 WP_014844635.1 DNA repair protein RadC Machinery gene
  CA922_RS13070 - 2857419..2857655 (+) 237 WP_014844636.1 hypothetical protein -
  CA922_RS13075 lepB 2857735..2861619 (+) 3885 WP_027226028.1 Dot/Icm T4SS GTPase-activating effector LepB -
  CA922_RS13080 thpR 2861752..2862315 (-) 564 WP_015961643.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25769.41 Da        Isoelectric Point: 6.7654

>NTDB_id=191972 CA922_RS13065 WP_014844635.1 2856700..2857383(+) (radC) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAIFISSGNNRKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=191972 CA922_RS13065 WP_014844635.1 2856700..2857383(+) (radC) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCATTTTCATCAGTTCGGGTAACAATAGAAAATCTTGTTTGCAACTAGCCTATGAGCTTACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCACCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACCTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X240

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.393

94.273

0.419