Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABE41_RS12500 Genome accession   NZ_CP016761
Coordinates   2421273..2422964 (-) Length   563 a.a.
NCBI ID   WP_066290778.1    Uniprot ID   -
Organism   Fictibacillus arsenicus strain G25-54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2416273..2427964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE41_RS12480 (ABE41_012480) - 2417975..2418211 (+) 237 WP_066290771.1 DUF2627 domain-containing protein -
  ABE41_RS12485 (ABE41_012485) spo0A 2418373..2419167 (-) 795 WP_066294822.1 sporulation transcription factor Spo0A -
  ABE41_RS12495 (ABE41_012495) spoIVB 2419850..2421136 (-) 1287 WP_066290775.1 SpoIVB peptidase -
  ABE41_RS12500 (ABE41_012500) recN 2421273..2422964 (-) 1692 WP_066290778.1 DNA repair protein RecN Machinery gene
  ABE41_RS12505 (ABE41_012505) argR 2422989..2423438 (-) 450 WP_066290784.1 transcriptional regulator ArgR -
  ABE41_RS12515 (ABE41_012515) - 2423833..2424651 (-) 819 WP_066290788.1 TlyA family RNA methyltransferase -
  ABE41_RS12520 (ABE41_012520) dxs 2424648..2426546 (-) 1899 WP_066294825.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABE41_RS12525 (ABE41_012525) - 2426567..2427163 (-) 597 WP_066290794.1 hypothetical protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63614.80 Da        Isoelectric Point: 5.4810

>NTDB_id=191970 ABE41_RS12500 WP_066290778.1 2421273..2422964(-) (recN) [Fictibacillus arsenicus strain G25-54]
MLAELSIRNFAIIDSLSVSFKKGLTVLTGETGAGKSIIIDAIGLLIGGRGSTEFVRYGTQKAEIEGLFHIHEYHRVYEKC
EEVGITITDEMVVLKRDITDSGKSICRVNGKLVTLSVLKEIGQALVDIHGQHETQYLMQPDKHLFLLDSFGDKGFKKELF
TYEEAFKEYKDISKQLSELSRNEQEIAQRIDLLEYQYEEITGANLLEDEDIKLEEEKRMLGNFEKIHGHLQDAYHSLYGE
GKGLELISSAMADFSQVAALDESLKADEEQFGSSFYVLEELTYKIRDMFDSLEYNPERLNGIELRLDEISKLKRKYGSSV
KEILRYGEKVKKELELIQNKDNHIEELKAKQSKVVTKLETSGKKLTKKRSEIAKTLKKAIQQQLKELYMEKTEFEVVMER
TEENQFLKTGMDSVEFFISPNQGEPLKPISKVASGGELSRVILALKTIFSENQGITAIIFDEVDTGVSGRVAQAIAEKIY
RVSVDSQVLCISHLPQVAAMADTHLHISKSTLQGRTVTKVLSLKTDEKVHEIGRMISGVEITDLTKQHAQELLQLAETIK
KSS

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=191970 ABE41_RS12500 WP_066290778.1 2421273..2422964(-) (recN) [Fictibacillus arsenicus strain G25-54]
TTGTTAGCAGAATTAAGTATTCGTAATTTTGCTATTATCGATTCTTTAAGCGTTTCTTTCAAAAAAGGGCTAACTGTTTT
AACAGGGGAAACAGGTGCAGGAAAATCGATCATTATTGATGCTATAGGCCTCTTAATAGGTGGGCGCGGCTCAACTGAGT
TTGTTCGTTATGGAACACAAAAAGCAGAAATTGAAGGATTATTCCACATTCATGAGTATCATCGTGTTTACGAGAAATGT
GAAGAAGTCGGGATAACCATAACTGATGAAATGGTTGTACTTAAACGTGATATCACTGATAGCGGAAAAAGCATCTGCCG
AGTAAACGGGAAGCTCGTCACACTTTCTGTATTAAAAGAAATAGGACAAGCTCTAGTTGATATTCACGGGCAGCATGAAA
CTCAATATTTGATGCAGCCGGATAAACACCTATTCTTATTAGACAGCTTTGGTGACAAAGGTTTTAAGAAAGAGCTCTTT
ACTTATGAAGAAGCGTTTAAAGAATATAAAGATATAAGCAAACAGCTTTCAGAACTCTCAAGGAATGAGCAAGAGATCGC
TCAGCGAATTGATTTATTAGAGTATCAATACGAAGAGATTACTGGGGCAAATTTGCTCGAGGATGAGGATATCAAGCTCG
AAGAAGAAAAGAGAATGCTCGGCAACTTCGAAAAAATTCATGGACACCTCCAGGACGCATATCACAGTCTTTATGGAGAA
GGTAAAGGTCTTGAACTTATTTCTAGTGCCATGGCTGATTTCTCACAGGTAGCAGCGCTGGATGAATCACTTAAGGCAGA
CGAGGAGCAGTTTGGCAGCAGTTTCTACGTGCTCGAAGAACTGACGTACAAAATTCGTGATATGTTTGATTCACTAGAGT
ATAACCCGGAAAGATTAAACGGCATCGAATTGCGTCTTGATGAAATTAGTAAACTCAAACGTAAATACGGTTCTTCTGTA
AAGGAAATCTTACGTTATGGGGAGAAGGTTAAAAAGGAACTTGAACTCATTCAAAACAAAGATAACCATATAGAAGAGCT
AAAAGCTAAGCAGTCAAAGGTTGTAACAAAATTAGAAACCTCTGGCAAAAAGCTTACAAAAAAGCGTTCAGAAATAGCGA
AAACACTAAAGAAAGCCATTCAGCAGCAGCTTAAAGAGCTTTATATGGAAAAAACGGAATTTGAGGTTGTAATGGAAAGA
ACGGAAGAAAATCAGTTTTTGAAGACAGGTATGGATTCTGTTGAATTTTTTATTTCTCCCAACCAGGGTGAGCCTTTGAA
GCCTATATCAAAAGTTGCTTCTGGAGGAGAATTATCCAGAGTTATTCTGGCTTTAAAAACCATTTTTTCTGAAAATCAAG
GAATTACTGCTATTATCTTTGATGAAGTGGACACAGGAGTATCAGGACGAGTCGCTCAGGCTATTGCAGAGAAGATCTAC
CGTGTATCGGTCGATTCCCAAGTGCTATGCATCAGCCATCTTCCTCAAGTTGCGGCTATGGCTGATACACATCTCCATAT
TTCAAAATCAACTCTCCAGGGCAGAACTGTTACGAAAGTACTTTCTTTAAAAACGGATGAAAAAGTTCATGAAATCGGCC
GGATGATTTCTGGCGTGGAAATTACTGATTTGACCAAACAGCATGCACAGGAATTGCTCCAGCTTGCAGAGACCATAAAA
AAATCATCTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.783

100

0.56

Multiple sequence alignment