Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABE41_RS00485 Genome accession   NZ_CP016761
Coordinates   91444..92817 (+) Length   457 a.a.
NCBI ID   WP_066285473.1    Uniprot ID   A0A1B1YZA9
Organism   Fictibacillus arsenicus strain G25-54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 86444..97817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE41_RS00465 (ABE41_000465) - 86610..87077 (+) 468 WP_066285464.1 CtsR family transcriptional regulator -
  ABE41_RS00470 (ABE41_000470) - 87114..87647 (+) 534 WP_066285466.1 UvrB/UvrC motif-containing protein -
  ABE41_RS00475 (ABE41_000475) - 87652..88722 (+) 1071 WP_066285468.1 protein arginine kinase -
  ABE41_RS00480 (ABE41_000480) clpC 88737..91157 (+) 2421 WP_066285471.1 ATP-dependent protease ATP-binding subunit ClpC -
  ABE41_RS00485 (ABE41_000485) radA 91444..92817 (+) 1374 WP_066285473.1 DNA repair protein RadA Machinery gene
  ABE41_RS00490 (ABE41_000490) disA 92826..93899 (+) 1074 WP_066285475.1 DNA integrity scanning diadenylate cyclase DisA -
  ABE41_RS00495 (ABE41_000495) - 93974..95065 (+) 1092 WP_066285477.1 PIN/TRAM domain-containing protein -
  ABE41_RS00500 (ABE41_000500) ispD 95085..95780 (+) 696 WP_066285480.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABE41_RS00505 (ABE41_000505) ispF 95777..96250 (+) 474 WP_066285482.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABE41_RS00510 (ABE41_000510) gltX 96289..97758 (+) 1470 WP_066285483.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49661.25 Da        Isoelectric Point: 6.6163

>NTDB_id=191954 ABE41_RS00485 WP_066285473.1 91444..92817(+) (radA) [Fictibacillus arsenicus strain G25-54]
MAKVKSIFLCQDCGYESPKWMGKCPGCQAWNTMVEETIRPEKNVRGLSSGDSNLKQKPQSIVEVKSEQEPRIPTNYQEFN
RVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSAQLAQKGERVLYISGEESVKQTKLRADRLEIAAKDLFVLAETDLELIEQ
AMADVMPSVMIIDSIQTVYRSEVTSAPGSVSQVRECTSHLMRMAKTKGIAIFIVGHVTKEGAIAGPRLLEHMVDAVLYFE
GERHHTFRILRAVKNRFGSTNEIGVFEMKEEGLEEVLNPSEIFLEERSKGAAGSTVVASLEGTRPMLVELQALISPTSFG
NPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLNVAGGVRLDEPAIDLAVAISIASSFRDAPTKPTDVMIGEIGLTG
EVRRVSRIEQRVHEAAKLGFTRAIIPDKNIGGWTVPNGIKVVGVSTVYEALQAALGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=191954 ABE41_RS00485 WP_066285473.1 91444..92817(+) (radA) [Fictibacillus arsenicus strain G25-54]
ATGGCGAAAGTAAAATCAATCTTTCTGTGCCAAGATTGCGGTTATGAGTCTCCAAAATGGATGGGGAAATGTCCAGGATG
CCAGGCGTGGAATACGATGGTGGAAGAAACCATCCGTCCTGAAAAAAACGTAAGGGGACTTAGTTCTGGAGATTCAAATC
TTAAGCAGAAACCACAGTCGATTGTGGAAGTTAAAAGTGAGCAGGAACCTCGTATTCCTACAAATTATCAGGAGTTTAAC
CGTGTTTTAGGCGGAGGGATTGTTCCAGGCTCTTTAGTTTTAGTTGGCGGAGATCCGGGAATCGGAAAATCAACGCTTCT
CCTTCAGACATCAGCACAGCTTGCTCAAAAAGGAGAACGTGTTCTCTACATATCTGGTGAAGAATCTGTTAAACAAACAA
AGTTAAGAGCGGACAGACTAGAAATTGCGGCAAAGGATTTGTTTGTATTAGCTGAAACGGATTTGGAACTGATAGAGCAG
GCAATGGCTGACGTTATGCCATCTGTAATGATCATCGATTCCATTCAAACCGTCTATCGGTCTGAAGTAACTTCAGCACC
AGGAAGTGTTTCGCAAGTAAGAGAATGTACATCGCATTTAATGAGAATGGCGAAAACAAAAGGAATTGCAATATTTATCG
TTGGACATGTTACAAAAGAAGGTGCAATTGCCGGACCTCGCCTTTTGGAGCACATGGTAGACGCTGTGCTTTATTTTGAA
GGTGAAAGACACCATACTTTCCGCATCTTAAGAGCAGTTAAGAACCGTTTTGGATCAACGAACGAGATTGGTGTTTTTGA
GATGAAGGAAGAAGGATTGGAAGAAGTATTGAATCCTTCTGAAATTTTCTTGGAAGAACGTTCAAAAGGCGCAGCTGGTT
CTACAGTAGTAGCTTCACTGGAAGGAACGCGGCCGATGCTTGTTGAGCTTCAGGCGCTTATTTCGCCGACCAGTTTTGGA
AACCCTAGAAGAATGGCTACTGGCATCGATCATAACCGTGTATCGCTGCTGATGGCTGTTTTAGAGAAAAGAGTCGGATT
GCTGCTTCAGAATCAAGATGCTTATTTAAATGTCGCAGGCGGAGTTAGACTCGATGAACCTGCGATAGATCTTGCTGTTG
CGATCAGCATCGCATCAAGCTTCAGAGATGCACCGACAAAACCTACGGATGTAATGATCGGAGAAATTGGCTTAACGGGA
GAAGTTCGAAGGGTTTCCCGTATTGAACAACGAGTACATGAAGCAGCAAAGCTAGGATTTACGCGTGCTATTATACCTGA
TAAAAATATCGGCGGCTGGACTGTTCCAAATGGAATAAAAGTCGTTGGTGTATCTACCGTTTATGAGGCATTACAAGCAG
CGTTAGGAGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(350-429)

AAA domain (AAA_25)

(71-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1YZA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.891

100

0.751
  radA Streptococcus pneumoniae Rx1

62.031

99.125

0.615
  radA Streptococcus pneumoniae D39

62.031

99.125

0.615
  radA Streptococcus pneumoniae R6

62.031

99.125

0.615
  radA Streptococcus pneumoniae TIGR4

62.031

99.125

0.615
  radA Streptococcus mitis NCTC 12261

62.031

99.125

0.615
  radA Streptococcus mitis SK321

62.031

99.125

0.615

Multiple sequence alignment