Detailed information NTG0191941

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA922_RS06350
• Genome accession: NZ_CP021268
• Coordinates: 1384484..1385509 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain Birmingham
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1379484..1390509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA922_RS06320	-	1379915..1380232 (+)	318	WP_011215326.1	DUF2845 domain-containing protein	-
CA922_RS06325	-	1380269..1380640 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
CA922_RS06330	-	1380697..1382412 (-)	1716	WP_027220722.1	NAD-dependent malic enzyme	-
CA922_RS06335	-	1382492..1382875 (+)	384	WP_027220721.1	hypothetical protein	-
CA922_RS06340	surE	1382878..1383636 (+)	759	WP_011215330.1	5'/3'-nucleotidase SurE	-
CA922_RS06345	-	1383655..1384398 (+)	744	WP_027220720.1	peptidoglycan DD-metalloendopeptidase family protein	-
CA922_RS06350	rpoS	1384484..1385509 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
CA922_RS06355	hmgA	1385612..1386862 (-)	1251	WP_027220719.1	homogentisate 1,2-dioxygenase	-
CA922_RS06360	-	1387009..1387752 (+)	744	WP_011213598.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CA922_RS06365	ruvC	1387752..1388276 (+)	525	WP_027220718.1	crossover junction endodeoxyribonuclease RuvC	-
CA922_RS06370	ruvA	1388273..1388872 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
CA922_RS06375	-	1388922..1389242 (+)	321	WP_027220717.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=191941 CA922_RS06350 WP_011213596.1 1384484..1385509(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=191941 CA922_RS06350 WP_011213596.1 1384484..1385509(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCTTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAATCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCAGAAA
TGGTGGATAAACCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCTTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548