Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA923_RS12815 Genome accession   NZ_CP021267
Coordinates   2821723..2822406 (+) Length   227 a.a.
NCBI ID   WP_010948191.1    Uniprot ID   Q5ZSM8
Organism   Legionella pneumophila subsp. pneumophila strain Burlington     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2816723..2827406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA923_RS12800 - 2818576..2819964 (-) 1389 WP_010948188.1 phosphomannomutase/phosphoglucomutase -
  CA923_RS12805 dut 2819965..2820423 (-) 459 WP_014842515.1 dUTP diphosphatase -
  CA923_RS12810 coaBC 2820450..2821646 (-) 1197 WP_015444059.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA923_RS12815 radC 2821723..2822406 (+) 684 WP_010948191.1 DNA repair protein RadC Machinery gene
  CA923_RS12820 - 2822442..2822678 (+) 237 WP_015444058.1 hypothetical protein -
  CA923_RS12825 lepB 2822758..2826642 (+) 3885 WP_010948192.1 Dot/Icm T4SS GTPase-activating effector LepB -
  CA923_RS12830 thpR 2826765..2827328 (-) 564 WP_010948193.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25749.42 Da        Isoelectric Point: 7.0185

>NTDB_id=191905 CA923_RS12815 WP_010948191.1 2821723..2822406(+) (radC) [Legionella pneumophila subsp. pneumophila strain Burlington]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=191905 CA923_RS12815 WP_010948191.1 2821723..2822406(+) (radC) [Legionella pneumophila subsp. pneumophila strain Burlington]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTACATAGCCTCTCTGATAT
TGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAGGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGAAGTGATTTTATTCATCTGCAAAAAGAAATCCGGTTATCTAACACACA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATTATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACGGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGATTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZSM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.119

96.035

0.414

Multiple sequence alignment