Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | BCV67_RS04895 | Genome accession | NZ_CP016756 |
| Coordinates | 1140118..1141848 (-) | Length | 576 a.a. |
| NCBI ID | WP_062166720.1 | Uniprot ID | - |
| Organism | Stenotrophomonas nitritireducens strain 2001 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1135118..1146848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV67_RS04880 | sucC | 1135364..1136533 (-) | 1170 | WP_057629765.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BCV67_RS04885 | - | 1136791..1138416 (+) | 1626 | WP_062166718.1 | ATP-binding protein | - |
| BCV67_RS04890 | pilR | 1138475..1139878 (+) | 1404 | WP_062166719.1 | sigma-54 dependent transcriptional regulator | Regulator |
| BCV67_RS04895 | pilB | 1140118..1141848 (-) | 1731 | WP_062166720.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCV67_RS04900 | pilA/pilAI | 1142683..1143096 (-) | 414 | WP_062166721.1 | pilin | Machinery gene |
| BCV67_RS04905 | pilC | 1143633..1144889 (+) | 1257 | WP_062166722.1 | type II secretion system F family protein | Machinery gene |
| BCV67_RS04910 | pilD | 1144893..1145759 (+) | 867 | WP_062166723.1 | A24 family peptidase | Machinery gene |
| BCV67_RS04915 | coaE | 1145815..1146432 (+) | 618 | WP_062166724.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 576 a.a. Molecular weight: 62345.53 Da Isoelectric Point: 5.3093
>NTDB_id=191897 BCV67_RS04895 WP_062166720.1 1140118..1141848(-) (pilB) [Stenotrophomonas nitritireducens strain 2001]
MNTLTSANLVGITGIARRLVQDGALEEAVARTAMSQAADAKVPLAQWLADKKLVSAAHMAAANAMEFGMPLMDVSVFDAN
QGAMKLVSEELLRRHQVLPLFKRGGKLFVGTSNPTQQLDEIKFQTNLVVEPILVDEEQIRRTLDLWLASNDSLGDSLGGD
DDGMGDLDIAAGDEDMGGGGDTGVDAKGDDTPVVKFVNKALVDAIRKGASDIHFEPYEDDYRVRFRIDGLLKSVAKAPVK
LNQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKSKQIDFRVSTLPTLFGEKIVLRILDASAAKLGIDKLGYEPDQQKLF
LDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDI
IMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCSNCKRPTQLPEN
ALLAEGYTAEQIAKGINLFEPVGCDECTEGYKGRTGIYQVMPMTDDIAAIVLQGGNAMDIADAAQKIGINDLRQSALIKA
AQGTTSLAEINRVTKD
MNTLTSANLVGITGIARRLVQDGALEEAVARTAMSQAADAKVPLAQWLADKKLVSAAHMAAANAMEFGMPLMDVSVFDAN
QGAMKLVSEELLRRHQVLPLFKRGGKLFVGTSNPTQQLDEIKFQTNLVVEPILVDEEQIRRTLDLWLASNDSLGDSLGGD
DDGMGDLDIAAGDEDMGGGGDTGVDAKGDDTPVVKFVNKALVDAIRKGASDIHFEPYEDDYRVRFRIDGLLKSVAKAPVK
LNQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKSKQIDFRVSTLPTLFGEKIVLRILDASAAKLGIDKLGYEPDQQKLF
LDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDI
IMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCSNCKRPTQLPEN
ALLAEGYTAEQIAKGINLFEPVGCDECTEGYKGRTGIYQVMPMTDDIAAIVLQGGNAMDIADAAQKIGINDLRQSALIKA
AQGTTSLAEINRVTKD
Nucleotide
Download Length: 1731 bp
>NTDB_id=191897 BCV67_RS04895 WP_062166720.1 1140118..1141848(-) (pilB) [Stenotrophomonas nitritireducens strain 2001]
ATGAACACACTGACATCCGCCAACCTAGTGGGTATTACCGGCATTGCTCGGCGTCTGGTCCAGGATGGAGCGCTGGAGGA
AGCCGTTGCCCGCACCGCGATGAGCCAGGCTGCCGACGCCAAGGTGCCGTTGGCACAGTGGCTGGCCGACAAGAAGCTGG
TGAGCGCCGCTCATATGGCCGCTGCCAACGCCATGGAATTCGGCATGCCTTTGATGGATGTGTCGGTGTTCGATGCCAAC
CAGGGCGCGATGAAGCTGGTCAGCGAGGAATTGCTGCGCCGGCATCAGGTGCTGCCGCTGTTCAAGCGTGGCGGCAAGCT
GTTCGTGGGCACCAGCAACCCGACCCAGCAACTGGATGAGATCAAGTTCCAGACCAACCTGGTGGTTGAGCCGATCCTGG
TTGATGAGGAGCAGATCCGCCGCACCCTGGACCTGTGGCTGGCCAGCAATGATTCGCTGGGCGATAGCCTCGGCGGAGAT
GACGACGGCATGGGCGATCTAGACATCGCCGCCGGTGACGAGGACATGGGTGGCGGTGGCGACACCGGTGTGGATGCCAA
AGGCGATGACACCCCGGTCGTGAAGTTCGTCAACAAAGCCTTGGTCGATGCCATCCGCAAGGGTGCTTCGGATATCCACT
TCGAGCCCTACGAAGATGACTACCGGGTGCGCTTCCGTATCGATGGCCTGCTCAAGAGCGTCGCCAAGGCGCCGGTGAAG
CTGAACCAGCGTATCGCTGCACGCCTGAAGGTGATGGCGCAGCTGGATATCGCGGAAAAGCGCGTGCCACAGGATGGTCG
CATCAAGCTTAATCTGTCCAAGAGCAAGCAGATCGACTTCCGTGTCAGTACCTTGCCGACCCTGTTCGGCGAAAAGATCG
TGTTGCGTATTCTTGACGCCAGCGCGGCCAAGTTGGGTATCGACAAGCTGGGCTATGAGCCGGACCAGCAGAAGCTGTTC
CTGGATGCTATCCACAAGCCTTACGGCATGGTGTTGGTAACCGGGCCGACTGGTTCGGGTAAGACGGTGTCGCTCTATAC
CGCGCTGGGCATCCTCAATGACGAGACCCGCAATATCTCTACCGCCGAGGACCCGGTGGAAATCCGCCTGCCAGGCGTGA
ACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTTGCAGCGGCGCTGCGTTCGTTCCTGCGACAGGATCCGGACATC
ATCATGGTCGGCGAAATCCGTGACCTGGAGACCGCGGAAATCGCGATCAAGGCTGCGCAGACCGGTCACATGGTGCTGTC
CACGCTGCATACCAACGATGCGCCGCAGACCATTGCGCGTCTGATGAACATGGGTATCGCACCGTACAACATCACCTCGT
CGGTGACCCTGGTGATCGCCCAGCGTCTGGCGCGACGCCTGTGCTCGAACTGCAAGCGTCCGACCCAGTTGCCGGAGAAT
GCATTGCTGGCCGAAGGCTATACCGCCGAGCAGATTGCCAAGGGCATCAATCTGTTTGAACCGGTGGGCTGTGATGAATG
CACGGAAGGCTACAAGGGCCGTACCGGTATCTATCAGGTGATGCCGATGACCGACGATATCGCTGCGATTGTGCTGCAGG
GCGGCAATGCGATGGATATTGCCGATGCTGCGCAGAAGATCGGCATCAATGACCTGCGCCAGTCAGCGCTGATCAAAGCG
GCGCAGGGCACCACCAGCCTGGCTGAAATCAACCGCGTGACCAAGGACTAA
ATGAACACACTGACATCCGCCAACCTAGTGGGTATTACCGGCATTGCTCGGCGTCTGGTCCAGGATGGAGCGCTGGAGGA
AGCCGTTGCCCGCACCGCGATGAGCCAGGCTGCCGACGCCAAGGTGCCGTTGGCACAGTGGCTGGCCGACAAGAAGCTGG
TGAGCGCCGCTCATATGGCCGCTGCCAACGCCATGGAATTCGGCATGCCTTTGATGGATGTGTCGGTGTTCGATGCCAAC
CAGGGCGCGATGAAGCTGGTCAGCGAGGAATTGCTGCGCCGGCATCAGGTGCTGCCGCTGTTCAAGCGTGGCGGCAAGCT
GTTCGTGGGCACCAGCAACCCGACCCAGCAACTGGATGAGATCAAGTTCCAGACCAACCTGGTGGTTGAGCCGATCCTGG
TTGATGAGGAGCAGATCCGCCGCACCCTGGACCTGTGGCTGGCCAGCAATGATTCGCTGGGCGATAGCCTCGGCGGAGAT
GACGACGGCATGGGCGATCTAGACATCGCCGCCGGTGACGAGGACATGGGTGGCGGTGGCGACACCGGTGTGGATGCCAA
AGGCGATGACACCCCGGTCGTGAAGTTCGTCAACAAAGCCTTGGTCGATGCCATCCGCAAGGGTGCTTCGGATATCCACT
TCGAGCCCTACGAAGATGACTACCGGGTGCGCTTCCGTATCGATGGCCTGCTCAAGAGCGTCGCCAAGGCGCCGGTGAAG
CTGAACCAGCGTATCGCTGCACGCCTGAAGGTGATGGCGCAGCTGGATATCGCGGAAAAGCGCGTGCCACAGGATGGTCG
CATCAAGCTTAATCTGTCCAAGAGCAAGCAGATCGACTTCCGTGTCAGTACCTTGCCGACCCTGTTCGGCGAAAAGATCG
TGTTGCGTATTCTTGACGCCAGCGCGGCCAAGTTGGGTATCGACAAGCTGGGCTATGAGCCGGACCAGCAGAAGCTGTTC
CTGGATGCTATCCACAAGCCTTACGGCATGGTGTTGGTAACCGGGCCGACTGGTTCGGGTAAGACGGTGTCGCTCTATAC
CGCGCTGGGCATCCTCAATGACGAGACCCGCAATATCTCTACCGCCGAGGACCCGGTGGAAATCCGCCTGCCAGGCGTGA
ACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTTGCAGCGGCGCTGCGTTCGTTCCTGCGACAGGATCCGGACATC
ATCATGGTCGGCGAAATCCGTGACCTGGAGACCGCGGAAATCGCGATCAAGGCTGCGCAGACCGGTCACATGGTGCTGTC
CACGCTGCATACCAACGATGCGCCGCAGACCATTGCGCGTCTGATGAACATGGGTATCGCACCGTACAACATCACCTCGT
CGGTGACCCTGGTGATCGCCCAGCGTCTGGCGCGACGCCTGTGCTCGAACTGCAAGCGTCCGACCCAGTTGCCGGAGAAT
GCATTGCTGGCCGAAGGCTATACCGCCGAGCAGATTGCCAAGGGCATCAATCTGTTTGAACCGGTGGGCTGTGATGAATG
CACGGAAGGCTACAAGGGCCGTACCGGTATCTATCAGGTGATGCCGATGACCGACGATATCGCTGCGATTGTGCTGCAGG
GCGGCAATGCGATGGATATTGCCGATGCTGCGCAGAAGATCGGCATCAATGACCTGCGCCAGTCAGCGCTGATCAAAGCG
GCGCAGGGCACCACCAGCCTGGCTGAAATCAACCGCGTGACCAAGGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
55.81 |
98.611 |
0.55 |
| pilB | Acinetobacter baumannii D1279779 |
55.226 |
99.653 |
0.55 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.113 |
98.611 |
0.514 |
| pilF | Neisseria gonorrhoeae MS11 |
49.123 |
98.958 |
0.486 |
| pilB | Vibrio cholerae strain A1552 |
47.909 |
99.653 |
0.477 |
| pilB | Vibrio campbellii strain DS40M4 |
46.479 |
98.611 |
0.458 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
45.965 |
98.958 |
0.455 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.548 |
92.188 |
0.365 |