Detailed information    

insolico Bioinformatically predicted

Overview


Name   cqsA   Type   Regulator
Locus tag   CA926_RS14585 Genome accession   NZ_CP021265
Coordinates   3240903..3242153 (+) Length   416 a.a.
NCBI ID   WP_027228999.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Los Angeles     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 3235903..3247153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA926_RS14550 - 3236196..3236495 (-) 300 WP_027229006.1 metalloregulator ArsR/SmtB family transcription factor -
  CA926_RS14555 - 3236748..3237092 (-) 345 WP_027229005.1 hypothetical protein -
  CA926_RS14560 - 3237209..3237838 (+) 630 WP_027229004.1 trimeric intracellular cation channel family protein -
  CA926_RS14565 - 3238052..3238546 (-) 495 WP_027229003.1 peptidylprolyl isomerase -
  CA926_RS14570 tgt 3238573..3239724 (-) 1152 WP_028379473.1 tRNA guanosine(34) transglycosylase Tgt -
  CA926_RS14575 - 3239773..3240276 (-) 504 WP_028379474.1 disulfide bond formation protein B -
  CA926_RS14580 - 3240273..3240701 (-) 429 WP_027229000.1 c-type cytochrome -
  CA926_RS14585 cqsA 3240903..3242153 (+) 1251 WP_027228999.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  CA926_RS14590 - 3242236..3243261 (-) 1026 WP_027228998.1 response regulator -
  CA926_RS14595 - 3243543..3244106 (+) 564 WP_027228997.1 HdeD family acid-resistance protein -
  CA926_RS14600 - 3244135..3245424 (-) 1290 WP_027222876.1 HAMP domain-containing sensor histidine kinase -
  CA926_RS14605 hemC 3245665..3246594 (+) 930 WP_027228996.1 hydroxymethylbilane synthase -

Sequence


Protein


Download         Length: 416 a.a.        Molecular weight: 46370.03 Da        Isoelectric Point: 9.0022

>NTDB_id=191774 CA926_RS14585 WP_027228999.1 3240903..3242153(+) (cqsA) [Legionella pneumophila subsp. fraseri strain Los Angeles]
MSNTEYLTSDNETQYVNGEEEHQRHAYPEFINISMEKYYVDRVNKSWRGKHILNGKTPTANSLIFSSNDYLNISQHPQLI
NAQIAAMQKYGNGQMQSAVFLNNSSFLLTQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKLIPFRHNSIDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYAEIARKFKCLLIVDESHSLGTHGPQGKGMV
AKLGLSSQIDLLTASLAKAFSGRGGLIAGDRRLIEYIRYSSLPSIFSSALMPHDLAGFSTSLEIITQEEWRRKKLQTNAA
FLREALSCLRINIGGSESQIVPLITGSEANTLWLRDELEKEELFGAVFCSPATPKNKCLIRLSIGAHHEKSDLLRVVECL
ANLARKRPEMPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=191774 CA926_RS14585 WP_027228999.1 3240903..3242153(+) (cqsA) [Legionella pneumophila subsp. fraseri strain Los Angeles]
ATGAGCAATACAGAATACCTGACAAGTGATAACGAGACTCAATATGTCAATGGAGAAGAAGAACATCAACGCCATGCTTA
TCCTGAGTTCATCAACATTTCCATGGAAAAATATTACGTGGATCGAGTCAATAAATCCTGGCGAGGGAAACACATACTCA
ATGGCAAAACCCCAACTGCAAATTCACTGATTTTTTCAAGCAATGATTATTTAAACATTAGTCAACATCCGCAATTAATT
AACGCTCAAATTGCGGCGATGCAAAAATATGGTAATGGTCAAATGCAATCCGCCGTATTTTTAAATAACAGCTCTTTCTT
GCTCACACAATGTGAAAAAAAATTTAGTTCCTTTTTAAATTATTCTGCAGCCTTGCTAACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTATAATACACCAGTGTATCTGGATTTTTATGCCCACATGTCTTTTTGGTCT
GGAGTAAAAGCAGCGAGAGCCAAACTCATACCGTTTCGACATAATTCAATCGATTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATTATTGCAGTAGACTCTATTTATAGTACGCTAGGCACAATTAGCCCATTGGCTGACTATGCGGAAATTG
CAAGAAAATTTAAATGCTTGCTCATCGTCGATGAATCTCATTCATTAGGGACTCATGGGCCGCAAGGCAAAGGGATGGTT
GCTAAACTGGGATTATCAAGCCAAATAGACCTCTTAACAGCAAGCTTGGCCAAAGCCTTTTCAGGACGAGGAGGACTCAT
TGCAGGAGATAGGAGACTGATAGAATATATAAGATATTCCTCTCTGCCTTCTATTTTCAGCTCTGCTTTAATGCCTCACG
ATTTGGCAGGATTTAGCACATCATTAGAAATTATTACGCAAGAAGAATGGAGAAGAAAAAAATTACAAACCAATGCTGCA
TTTTTACGGGAAGCCTTATCATGCCTGAGAATTAATATCGGGGGTAGTGAATCGCAAATAGTTCCTTTAATAACTGGAAG
CGAGGCTAATACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGAGCTCTTTGGAGCGGTATTCTGTTCGCCTGCCACCC
CTAAAAATAAATGTCTGATTCGTTTATCTATCGGCGCACATCACGAAAAATCGGATTTGCTCAGAGTTGTTGAGTGTCTG
GCCAATCTTGCAAGAAAAAGACCCGAAATGCCTTTGTTTAAAGGTAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.479

90.385

0.411