Detailed information NTG0191735

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA926_RS06255
• Genome accession: NZ_CP021265
• Coordinates: 1387282..1388307 (+)
• Length: 341 a.a.
• NCBI ID: WP_027226811.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. fraseri strain Los Angeles
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1382282..1393307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA926_RS06225	-	1382713..1383030 (+)	318	WP_027226805.1	DUF2845 domain-containing protein	-
CA926_RS06230	-	1383066..1383437 (+)	372	WP_027226806.1	protease inhibitor I42 family protein	-
CA926_RS06235	-	1383492..1385210 (-)	1719	WP_027226807.1	NAD-dependent malic enzyme	-
CA926_RS06240	-	1385290..1385673 (+)	384	WP_027226808.1	hypothetical protein	-
CA926_RS06245	surE	1385676..1386434 (+)	759	WP_027226809.1	5'/3'-nucleotidase SurE	-
CA926_RS06250	-	1386456..1387196 (+)	741	WP_032830130.1	peptidoglycan DD-metalloendopeptidase family protein	-
CA926_RS06255	rpoS	1387282..1388307 (+)	1026	WP_027226811.1	RNA polymerase sigma factor RpoS	Regulator
CA926_RS06260	hmgA	1388450..1389700 (-)	1251	WP_027226812.1	homogentisate 1,2-dioxygenase	-
CA926_RS06265	-	1389846..1390589 (+)	744	WP_028379081.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CA926_RS06270	ruvC	1390589..1391113 (+)	525	WP_027226814.1	crossover junction endodeoxyribonuclease RuvC	-
CA926_RS06275	ruvA	1391110..1391709 (+)	600	WP_027226815.1	Holliday junction branch migration protein RuvA	Machinery gene
CA926_RS06280	-	1391768..1392088 (+)	321	WP_027226816.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39479.78 Da
• Isoelectric Point: 4.3759

>NTDB_id=191735 CA926_RS06255 WP_027226811.1 1387282..1388307(+) (rpoS) [Legionella pneumophila subsp. fraseri strain Los Angeles]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEELDEFPEFIDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=191735 CA926_RS06255 WP_027226811.1 1387282..1388307(+) (rpoS) [Legionella pneumophila subsp. fraseri strain Los Angeles]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAAGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTTTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATGGAAGAAGAGCTTGATGAGTTTCCAGAGTTTATTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACAGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAATCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGGTTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACCATAGAACGTGCCATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAACCATCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAGCCTTTGGAGGATGTTCAAAAACTATTGGGCTTGAATGATAAAGTCGCTTCAGTTGATACCCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACGCTAAGAACCTTGTTGGAGCGGGTTGGATTAACGCAAGAGGATTTGTTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548