Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CA928_RS14890 Genome accession   NZ_CP021264
Coordinates   3310674..3312851 (+) Length   725 a.a.
NCBI ID   WP_014844911.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-5387     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3305674..3317851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA928_RS14860 - 3306146..3306589 (-) 444 WP_011216694.1 hypothetical protein -
  CA928_RS14865 - 3306671..3307657 (+) 987 WP_027224886.1 tRNA-dihydrouridine synthase family protein -
  CA928_RS14870 - 3307716..3308075 (-) 360 WP_027224885.1 hypothetical protein -
  CA928_RS14875 - 3308132..3308887 (-) 756 WP_027224884.1 pteridine reductase -
  CA928_RS14880 - 3309064..3310176 (+) 1113 WP_027224883.1 SAM-dependent methyltransferase -
  CA928_RS14885 - 3310179..3310673 (+) 495 WP_011216699.1 6-carboxytetrahydropterin synthase -
  CA928_RS14890 priA 3310674..3312851 (+) 2178 WP_014844911.1 primosomal protein N' Machinery gene
  CA928_RS14895 - 3312848..3313240 (+) 393 WP_027228733.1 thioesterase family protein -
  CA928_RS14900 - 3313350..3313619 (-) 270 WP_027224882.1 hypothetical protein -
  CA928_RS14905 thyA 3313695..3314489 (-) 795 WP_014844914.1 thymidylate synthase -
  CA928_RS14910 lgt 3314486..3315256 (-) 771 WP_014844915.1 prolipoprotein diacylglyceryl transferase -
  CA928_RS14915 - 3315274..3316080 (-) 807 WP_014844916.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 81548.04 Da        Isoelectric Point: 9.3591

>NTDB_id=191709 CA928_RS14890 WP_014844911.1 3310674..3312851(+) (priA) [Legionella pneumophila subsp. fraseri strain D-5387]
MNDIYQVCIPHTNRDCFDYETLDLTPCIGGRVWVPFRNQARVGIVINKVCGQQTGHSLKKITSIIDEKPLVPEDLLELCL
WVGSYYQSPLSEVIPLVIPKKYRLGLPCSLPTEDFYQLNIPVEKAKTLISKKAKKQHELIDFLSRHQKGISKQTLKQHGY
NGTQIAALLACQAINLSQQVILPTKIPEKLSPPLTLNPEQAVAVASILEHIHHYQCFLLQGVTGSGKTEVYLHVIAKILE
QGKQVLVLVPEIGLTPQLLSRFTARFNHPITVLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLPNLGLIIIDEEH
DSSLKQMEGVRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQLIDLRSQMVQHGL
ALPTLKIIENHLLQQNQVLVFINRRGFAPVLLCHQCGWMVDCKACDSHLTLHKQAGQMICHHCGLTQRIPLFCNNCQSKE
LIPVGSGTQRIYEFLSHQFPDTNVLRIDRDEVSKKNSLNSHLDKINKGEAQLIIGTQMLAKGHHFPRLSLVVVIDADAGF
YNQDFRAIEHLGQLLTQVSGRAGRAEHPGQVLIQTYLPDHPLLNLLIQHGYDEFANALLISRQEAEMPPFQFLAVIRAQG
KTVNKVAQFLKATKDQIQAHPLKVLGPAPAPLPRKANQHRMQLLIKSPSRKVLKSSLTQLREWLTMNKLSNGIRWNVDVD
PMDLS

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=191709 CA928_RS14890 WP_014844911.1 3310674..3312851(+) (priA) [Legionella pneumophila subsp. fraseri strain D-5387]
ATGAACGATATTTATCAAGTTTGTATCCCCCATACCAATCGAGATTGTTTTGATTACGAAACCCTGGATTTAACTCCATG
CATTGGCGGAAGAGTATGGGTTCCTTTTCGCAATCAAGCCCGAGTGGGCATTGTTATCAATAAAGTTTGTGGCCAGCAAA
CGGGCCATTCGTTAAAGAAAATCACTTCAATAATCGATGAGAAACCTCTGGTTCCTGAAGATCTCTTAGAGCTTTGTCTA
TGGGTAGGAAGTTATTATCAGTCACCATTATCTGAAGTGATTCCTTTGGTAATACCCAAAAAATATCGCCTGGGTTTGCC
TTGCTCACTACCTACAGAAGATTTTTATCAATTGAATATCCCTGTTGAAAAGGCGAAGACACTCATCTCGAAAAAAGCAA
AAAAGCAACATGAATTGATTGATTTTTTAAGCAGGCACCAGAAAGGAATTTCCAAACAGACCCTAAAACAACATGGCTAC
AACGGAACTCAAATTGCGGCACTACTTGCTTGTCAAGCCATTAACCTGTCACAGCAAGTTATCTTGCCAACCAAAATTCC
TGAAAAACTCAGTCCACCGTTAACACTCAATCCTGAACAAGCCGTTGCCGTAGCTTCCATTTTAGAACACATCCATCATT
ACCAATGCTTTTTACTGCAAGGTGTTACCGGAAGTGGTAAAACAGAGGTTTATTTGCATGTCATTGCCAAAATATTGGAG
CAAGGCAAACAAGTATTGGTGCTGGTACCAGAAATCGGGTTAACCCCTCAGCTTTTATCTCGTTTTACAGCCCGATTTAA
CCATCCCATAACCGTATTACATTCCAATTTGAATGAATCAGAAAGGCAAATTGCCTGGCAGCTGGCAAAAGAGAACAAAG
TTAAAATGGTGATTGGAACTCGTTCTGCCGTTTTTACCCCTCTGCCCAATCTCGGTTTAATTATCATCGATGAAGAGCAT
GACAGTTCGCTCAAACAAATGGAAGGGGTGCGTTATTCTGCGCGAGATACTGCTTTAATGCGTGCTCATCTTGCCAATAT
TCCTATCATTCTTGGTACAGCCACTCCCAGTCTGGAAACCATCCACAACTGCAAACAAAAAAAATATAATTTATTACGCT
TAACGCATAAAGCTGCCTCCACTACACCATTACACTATCAACTGATTGATTTAAGATCGCAAATGGTACAGCATGGCTTG
GCTCTCCCAACCCTTAAAATCATAGAAAATCATTTGCTGCAACAAAACCAGGTTCTTGTTTTCATTAACCGACGCGGCTT
TGCCCCAGTGTTACTTTGCCATCAATGTGGATGGATGGTTGATTGCAAAGCATGCGATAGCCATTTAACCTTGCATAAAC
AGGCAGGACAAATGATTTGTCATCATTGTGGATTAACCCAAAGAATACCCTTGTTTTGCAATAACTGCCAAAGCAAAGAA
TTAATCCCCGTAGGTTCTGGCACCCAGAGAATTTATGAATTTTTAAGCCATCAGTTTCCAGATACGAATGTTTTACGAAT
TGACCGAGATGAGGTTAGTAAAAAAAACTCTCTAAACAGCCATTTGGACAAAATTAATAAAGGGGAAGCTCAGCTGATCA
TAGGCACTCAAATGCTAGCCAAAGGACACCATTTTCCCCGCCTATCCCTGGTCGTTGTCATAGATGCTGATGCGGGTTTT
TACAACCAGGATTTCCGGGCTATTGAACATTTGGGACAATTATTAACTCAAGTATCTGGACGAGCAGGCAGGGCAGAACA
TCCCGGGCAAGTATTGATTCAAACTTATTTACCTGATCATCCCCTGCTTAATCTACTCATTCAGCATGGGTATGATGAAT
TTGCAAACGCTTTATTAATTTCAAGACAAGAAGCTGAAATGCCCCCTTTTCAGTTTTTGGCGGTCATCAGAGCTCAGGGC
AAAACCGTCAACAAGGTGGCTCAATTCCTAAAAGCAACCAAAGATCAAATTCAAGCCCATCCTCTCAAGGTATTAGGCCC
TGCACCAGCTCCTTTGCCACGAAAAGCTAACCAGCATAGAATGCAACTATTAATTAAATCCCCTTCAAGAAAAGTTCTAA
AAAGTTCATTGACGCAATTAAGAGAGTGGTTAACAATGAACAAATTAAGTAATGGCATCCGCTGGAATGTGGATGTTGAT
CCTATGGACTTATCATGA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(629-721)

3DNA-binding domain (3BD) (PriA_3primeBD)

(6-99)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(442-468)

Helicase conserved C-terminal domain (Helicase_C)

(489-585)

Type III restriction enzyme, res subunit (ResIII)

(195-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

42.313

100

0.429

Multiple sequence alignment