Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L50_RS14890 Genome accession   NZ_CP016680
Coordinates   1457760..1458224 (-) Length   154 a.a.
NCBI ID   WP_164967097.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22822     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452760..1463224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L50_RS07555 (A6L50_07555) - 1453105..1454562 (+) 1458 WP_002258745.1 VWA domain-containing protein -
  A6L50_RS12755 - 1454599..1455350 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  A6L50_RS07575 (A6L50_07575) - 1455764..1456237 (-) 474 Protein_1396 transposase -
  A6L50_RS07580 (A6L50_07580) - 1456469..1456681 (+) 213 WP_002224145.1 SWIM zinc finger family protein -
  A6L50_RS15750 (A6L50_07585) - 1456865..1457133 (+) 269 Protein_1398 5'-nucleotidase -
  A6L50_RS07590 (A6L50_07590) comP 1457223..1457672 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  A6L50_RS14890 comE 1457760..1458224 (-) 465 WP_164967097.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16442.72 Da        Isoelectric Point: 10.7894

>NTDB_id=191646 A6L50_RS14890 WP_164967097.1 1457760..1458224(-) (comE) [Neisseria meningitidis strain M22822]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191646 A6L50_RS14890 WP_164967097.1 1457760..1458224(-) (comE) [Neisseria meningitidis strain M22822]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment