Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L50_RS14580 Genome accession   NZ_CP016680
Coordinates   27136..27600 (+) Length   154 a.a.
NCBI ID   WP_164967094.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22822     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 22136..32600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L50_RS14580 (A6L50_00150) comE 27136..27600 (+) 465 WP_164967094.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6L50_RS00155 (A6L50_00155) - 27714..28151 (-) 438 Protein_21 HK97 family phage prohead protease -
  A6L50_RS00160 (A6L50_00160) - 28263..28856 (-) 594 WP_002229776.1 hypothetical protein -
  A6L50_RS00165 (A6L50_00165) prmB 29001..29900 (+) 900 WP_002235090.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  A6L50_RS00175 (A6L50_00175) - 30181..30918 (+) 738 WP_002229783.1 toxin-antitoxin system YwqK family antitoxin -
  A6L50_RS00180 (A6L50_00180) - 31044..31316 (+) 273 WP_002212673.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16442.72 Da        Isoelectric Point: 10.7894

>NTDB_id=191645 A6L50_RS14580 WP_164967094.1 27136..27600(+) (comE) [Neisseria meningitidis strain M22822]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191645 A6L50_RS14580 WP_164967094.1 27136..27600(+) (comE) [Neisseria meningitidis strain M22822]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTGAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment