Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   A6L50_RS04650 Genome accession   NZ_CP016680
Coordinates   879526..883140 (+) Length   1204 a.a.
NCBI ID   WP_002234775.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22822     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874526..888140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L50_RS04630 (A6L50_04630) - 875802..876557 (-) 756 WP_002222716.1 amino acid ABC transporter ATP-binding protein -
  A6L50_RS04635 (A6L50_04635) - 876567..877283 (-) 717 WP_002213985.1 amino acid ABC transporter permease -
  A6L50_RS04640 (A6L50_04640) - 877273..878100 (-) 828 WP_002221189.1 amino acid ABC transporter substrate-binding protein -
  A6L50_RS04645 (A6L50_04645) - 878385..879293 (+) 909 WP_002232086.1 Dyp-type peroxidase -
  A6L50_RS04650 (A6L50_04650) recB 879526..883140 (+) 3615 WP_002234775.1 exodeoxyribonuclease V subunit beta Machinery gene
  A6L50_RS04655 (A6L50_04655) - 883179..883538 (+) 360 WP_002219522.1 rhodanese-like domain-containing protein -
  A6L50_RS04660 (A6L50_04660) - 883670..884149 (+) 480 WP_002226489.1 DUF302 domain-containing protein -
  A6L50_RS04665 (A6L50_04665) radA 884425..885804 (-) 1380 WP_002258526.1 DNA repair protein RadA Machinery gene
  A6L50_RS14755 - 885861..886037 (+) 177 WP_009349107.1 hypothetical protein -
  A6L50_RS04670 (A6L50_04670) hemE 885990..887054 (-) 1065 WP_002258525.1 uroporphyrinogen decarboxylase -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134729.11 Da        Isoelectric Point: 5.4827

>NTDB_id=191617 A6L50_RS04650 WP_002234775.1 879526..883140(+) (recB) [Neisseria meningitidis strain M22822]
MSASIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRGRLDDVLQVLE
SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVEMTEEDGDRLLIPAQDFWRERVSNDPVLAALALKRKAVPQTVLAQISRYLSRPYLNFRRPQADLKQAQRNAETS
WQTICRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLGDQISLAENNSNDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRRAYACEKDGITMLKRNW
QRVTDNAPADTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEMWLPAVAEMAEACRKTPLT
GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICII
DYKSNHLGADASAYTQQAMDEAVTHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGTDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=191617 A6L50_RS04650 WP_002234775.1 879526..883140(+) (recB) [Neisseria meningitidis strain M22822]
ATGTCTGCAAGCATCCAAGCATTCGACCCGCTAACCGTCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACACGCCTGATCGTATTAGAACAAAAAAACGTCGAACGCGTATTGGTCG
TAACCTTCACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGGGCGTTTGGACGATGTGTTACAAGTTTTAGAA
AGCAAAGGAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATTGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGAACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTATACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAAATGACCGAAGAAGACGGCGACCGCCTGCTTATCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGCTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATTTCGC
GCTATCTTTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCAACGCCGAAACCTCA
TGGCAAACCATCTGCCGCCTGCTGCCAGAACTGGAAGCCGGCTTTTGGCGCATTCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACACACGACAGACTCTTGAAACTTGCATCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGACCGCTGTTCCTCGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGATTGTCGCCCAAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGACGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTTTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCGGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCCATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCCCAAAACCGCAACCCCGCCGCT
TTGCACAAGTGGCTGGGCGACCAAATCAGCCTTGCCGAAAACAACAGCAACGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCCAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTACCTGATTGAAGGCT
TGCCGCAAGACAGCCGTGAAACCGTCCGCCGTGCCTATGCGTGTGAAAAAGACGGCATAACGATGCTCAAACGCAACTGG
CAGCGCGTGACGGACAACGCCCCGGCCGACACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCAGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCTTTAAGCCGCCATACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGATTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACCCTCATTGCCGACAAGC
TGAAGAAATACGGGTTTGAAGAAATGTGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCGTAAAACGCCGCTGACG
GGGGCATACTGCCTGTCCGACATTCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCATACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCCGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCATCATC
GACTACAAATCAAACCATCTCGGCGCGGACGCATCCGCCTACACGCAACAGGCGATGGACGAAGCCGTCACGCACCACCA
CTATTACCTTCAGGCGCTGATTTACGCCGTTGCCGCCGCACGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGCACAGACGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1182)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

94.684

100

0.947

Multiple sequence alignment