Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA934_RS12795 Genome accession   NZ_CP021259
Coordinates   2823822..2824505 (+) Length   227 a.a.
NCBI ID   WP_106225709.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2818822..2829505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS12775 - 2818831..2820546 (+) 1716 WP_027227514.1 tetratricopeptide repeat protein -
  CA934_RS12780 - 2820675..2822063 (-) 1389 WP_106225707.1 phosphomannomutase/phosphoglucomutase -
  CA934_RS12785 dut 2822064..2822522 (-) 459 WP_027227516.1 dUTP diphosphatase -
  CA934_RS12790 coaBC 2822549..2823745 (-) 1197 WP_106225708.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA934_RS12795 radC 2823822..2824505 (+) 684 WP_106225709.1 DNA repair protein RadC Machinery gene
  CA934_RS12800 - 2824541..2824777 (+) 237 WP_027222593.1 hypothetical protein -
  CA934_RS12805 - 2824857..2828744 (+) 3888 WP_106225710.1 LepB GTPase-activating domain-containing protein -
  CA934_RS12810 thpR 2828865..2829428 (-) 564 WP_106225711.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25825.47 Da        Isoelectric Point: 6.9076

>NTDB_id=191492 CA934_RS12795 WP_106225709.1 2823822..2824505(+) (radC) [Legionella pneumophila strain D-7708]
MMFAQTAQQLDLREKLLTNGVQSLSDIELLAVFISSGNSKKSCLQLAYELTKHLGNLRNILNTDLQSFKSIQGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVHPRPIVER
VLQLNAAALILAHNHPSGLSDASEQDFAITERIRNALDLIDTRLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=191492 CA934_RS12795 WP_106225709.1 2823822..2824505(+) (radC) [Legionella pneumophila strain D-7708]
ATGATGTTTGCCCAAACAGCGCAACAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTGCAAAGTCTCTCTGATAT
CGAACTCTTAGCCGTTTTTATCAGTTCTGGTAACAGTAAAAAATCTTGCTTGCAATTAGCTTATGAGCTTACTAAACACT
TGGGAAATTTACGTAATATCCTCAATACTGATCTGCAAAGTTTTAAATCAATCCAGGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTCACCTGCAAAAAGAAATCCGCTTATCTAACACGCA
GCAAACTTATGCTTTTTTAAAAAAGCGATTGCGAGACTATAAAAATGAAACCTTTGCAGCGCTCTTTCTGGATAACCAAC
ATCGAATTATTGCTTATGAAGAATTATTCTCTGGAACCATCAACACAGCAACAGTCCATCCCAGGCCTATTGTAGAACGT
GTACTGCAATTAAATGCTGCCGCTTTAATTCTGGCACATAACCATCCCTCGGGTTTGTCTGATGCAAGCGAGCAAGATTT
TGCCATTACAGAACGCATTCGAAATGCTTTGGATCTCATTGATACCCGCTTACTTGATCACATTGTCATCGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

40.625

98.678

0.401

Multiple sequence alignment