Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA935_RS12540 Genome accession   NZ_CP021258
Coordinates   2804138..2804821 (+) Length   227 a.a.
NCBI ID   WP_027227518.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-5744     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2799138..2809821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA935_RS12520 - 2799147..2800862 (+) 1716 WP_027227514.1 tetratricopeptide repeat protein -
  CA935_RS12525 - 2800991..2802379 (-) 1389 WP_027227515.1 phosphomannomutase/phosphoglucomutase -
  CA935_RS12530 dut 2802380..2802838 (-) 459 WP_027227516.1 dUTP diphosphatase -
  CA935_RS12535 coaBC 2802865..2804061 (-) 1197 WP_027227517.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA935_RS12540 radC 2804138..2804821 (+) 684 WP_027227518.1 DNA repair protein RadC Machinery gene
  CA935_RS12550 lepB 2805162..2809046 (+) 3885 WP_027227520.1 Dot/Icm T4SS GTPase-activating effector LepB -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25733.37 Da        Isoelectric Point: 6.6922

>NTDB_id=191422 CA935_RS12540 WP_027227518.1 2804138..2804821(+) (radC) [Legionella pneumophila subsp. fraseri strain D-5744]
MMFAQTAQQLDLREKLLTNGVQSLSDIELLAVFISSGNSKKSCLQLAYELTKHLGNLRNILNTDLQSFKSIQGLGEVRYA
QLQAAKEICHRSDFIHLQKEIQLTNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVHPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=191422 CA935_RS12540 WP_027227518.1 2804138..2804821(+) (radC) [Legionella pneumophila subsp. fraseri strain D-5744]
ATGATGTTTGCCCAAACAGCGCAACAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTGCAAAGCCTCTCTGATAT
CGAACTCTTAGCCGTTTTTATCAGTTCTGGTAACAGTAAAAAATCTTGCTTGCAATTAGCTTATGAGCTTACTAAACACT
TGGGAAATTTACGTAATATCCTCAATACTGATCTGCAAAGTTTTAAATCAATCCAGGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTTATTCATCTGCAAAAAGAAATACAGTTAACTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGATTGCGAGACTATAAAAATGAAACCTTTGCCGCACTCTTTCTGGATAATCAAC
ACCGAATCATTGCTTATGAAGAATTATTTTCAGGGACCATCAACACAGCAACAGTCCATCCCAGACCTATTGTAGAACGT
GTACTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.964

98.678

0.414

Multiple sequence alignment