Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L20_RS01570 Genome accession   NZ_CP016675
Coordinates   282308..282901 (+) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M07161     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277308..287901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L20_RS01545 (A6L20_01545) - 277771..278358 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L20_RS01550 (A6L20_01550) dnaB 278521..279927 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L20_RS01555 (A6L20_01555) pilH 280082..280759 (+) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L20_RS01560 (A6L20_01560) pilV 280783..281394 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L20_RS01565 (A6L20_01565) pilJ 281391..282329 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L20_RS01570 (A6L20_01570) pilK 282308..282901 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L20_RS01575 (A6L20_01575) pilX 282906..283379 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L20_RS01580 (A6L20_01580) - 285438..285866 (-) 429 Protein_299 AzlC family ABC transporter permease -
  A6L20_RS01585 (A6L20_01585) dut 286009..286461 (+) 453 WP_002220679.1 dUTP diphosphatase -
  A6L20_RS01590 (A6L20_01590) dapC 286537..287724 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=191377 A6L20_RS01570 WP_002248275.1 282308..282901(+) (pilK) [Neisseria meningitidis strain M07161]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=191377 A6L20_RS01570 WP_002248275.1 282308..282901(+) (pilK) [Neisseria meningitidis strain M07161]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment