Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA270_RS19480 Genome accession   NZ_CP021207
Coordinates   3792073..3792549 (+) Length   158 a.a.
NCBI ID   WP_001186771.1    Uniprot ID   -
Organism   Escherichia coli strain strain Z247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3787073..3797549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA270_RS19445 (CA270_19435) - 3787550..3787744 (-) 195 WP_001304548.1 hypothetical protein -
  CA270_RS19450 (CA270_19440) - 3787738..3788622 (+) 885 WP_000010386.1 YfjP family GTPase -
  CA270_RS19455 (CA270_19445) - 3788825..3789505 (+) 681 WP_001282912.1 WYL domain-containing protein -
  CA270_RS19460 (CA270_19450) - 3789656..3790333 (+) 678 WP_021520461.1 hypothetical protein -
  CA270_RS19465 (CA270_19455) - 3790339..3790572 (+) 234 WP_001278287.1 DUF905 family protein -
  CA270_RS19470 (CA270_19460) - 3790662..3791480 (+) 819 WP_001175163.1 DUF932 domain-containing protein -
  CA270_RS19475 (CA270_19465) - 3791572..3792057 (+) 486 WP_021524627.1 antirestriction protein -
  CA270_RS19480 (CA270_19470) radC 3792073..3792549 (+) 477 WP_001186771.1 RadC family protein Machinery gene
  CA270_RS19485 (CA270_19475) - 3792636..3792857 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  CA270_RS19490 (CA270_19480) - 3792937..3793305 (+) 369 WP_001285575.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CA270_RS19495 (CA270_19485) - 3793395..3793772 (+) 378 WP_001094425.1 TA system toxin CbtA family protein -
  CA270_RS19500 (CA270_19490) - 3793769..3794257 (+) 489 WP_000761683.1 DUF5983 family protein -
  CA270_RS19505 (CA270_19495) - 3794269..3794466 (+) 198 WP_000839272.1 DUF957 domain-containing protein -
  CA270_RS28775 - 3794551..3794700 (+) 150 Protein_3606 hypothetical protein -
  CA270_RS29570 - 3794670..3794804 (+) 135 Protein_3607 transcriptional regulator -
  CA270_RS19515 (CA270_19505) - 3795247..3795418 (+) 172 Protein_3608 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17675.29 Da        Isoelectric Point: 7.2020

>NTDB_id=191352 CA270_RS19480 WP_001186771.1 3792073..3792549(+) (radC) [Escherichia coli strain strain Z247]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=191352 CA270_RS19480 WP_001186771.1 3792073..3792549(+) (radC) [Escherichia coli strain strain Z247]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment