Detailed information NTG0191305

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA270_RS09730
• Genome accession: NZ_CP021207
• Coordinates: 1870341..1871333 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain strain Z247
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1865341..1876333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA270_RS09710 (CA270_09720)	ygbM	1865979..1866755 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
CA270_RS09715 (CA270_09725)	ygbN	1866844..1868208 (+)	1365	WP_000104433.1	GntP family transporter	-
CA270_RS09720 (CA270_09730)	-	1868351..1869394 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
CA270_RS09725 (CA270_09735)	-	1869619..1870170 (+)	552	WP_001179444.1	flavodoxin family protein	-
CA270_RS09730 (CA270_09740)	rpoS	1870341..1871333 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CA270_RS09735 (CA270_09745)	nlpD	1871396..1872490 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
CA270_RS09740 (CA270_09750)	pcm	1872675..1873301 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CA270_RS09745 (CA270_09755)	surE	1873295..1874056 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CA270_RS09750 (CA270_09760)	truD	1874037..1875086 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
CA270_RS09755 (CA270_09765)	ispF	1875083..1875562 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CA270_RS09760 (CA270_09770)	ispD	1875562..1876272 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=191305 CA270_RS09730 WP_000081550.1 1870341..1871333(-) (rpoS) [Escherichia coli strain strain Z247]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=191305 CA270_RS09730 WP_000081550.1 1870341..1871333(-) (rpoS) [Escherichia coli strain strain Z247]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715