Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA268_RS25005 Genome accession   NZ_CP021202
Coordinates   4852263..4852739 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain Z1002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4847263..4857739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA268_RS24980 (CA268_24940) - 4847659..4850505 (+) 2847 WP_086352853.1 Ag43/Cah family autotransporter adhesin -
  CA268_RS24985 (CA268_24945) - 4850576..4850771 (+) 196 Protein_4560 DUF905 family protein -
  CA268_RS24995 (CA268_24955) - 4850889..4851707 (+) 819 WP_057950853.1 DUF932 domain-containing protein -
  CA268_RS25000 (CA268_24960) - 4851762..4852247 (+) 486 WP_000849556.1 antirestriction protein -
  CA268_RS25005 (CA268_24965) radC 4852263..4852739 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  CA268_RS25010 (CA268_24970) - 4852808..4853029 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  CA268_RS30320 cbeA 4853103..4853471 (+) 369 Protein_4565 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CA268_RS25025 (CA268_24985) cbtA 4853560..4853937 (+) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CA268_RS25030 (CA268_24990) - 4853934..4854364 (+) 431 Protein_4567 DUF5983 family protein -
  CA268_RS25035 (CA268_24995) - 4854381..4854557 (+) 177 WP_057950854.1 DUF957 domain-containing protein -
  CA268_RS25040 (CA268_25000) - 4854663..4854893 (+) 231 Protein_4569 hypothetical protein -
  CA268_RS25045 (CA268_25005) kpsS 4854919..4856139 (-) 1221 WP_000794251.1 capsular biosynthesis protein Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=191273 CA268_RS25005 WP_001186726.1 4852263..4852739(+) (radC) [Escherichia coli strain Z1002]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=191273 CA268_RS25005 WP_001186726.1 4852263..4852739(+) (radC) [Escherichia coli strain Z1002]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment