Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   A6L51_RS10930 Genome accession   NZ_CP016672
Coordinates   2076221..2076766 (+) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain M22828     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2071221..2081766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L51_RS10910 (A6L51_10910) - 2071290..2073686 (-) 2397 WP_002232986.1 penicillin-binding protein 1A -
  A6L51_RS10915 (A6L51_10915) pilM 2073838..2074953 (+) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  A6L51_RS10920 (A6L51_10920) pilN 2074956..2075555 (+) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  A6L51_RS10925 (A6L51_10925) - 2075556..2076203 (+) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  A6L51_RS10930 (A6L51_10930) pilP 2076221..2076766 (+) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  A6L51_RS10935 (A6L51_10935) pilQ 2076785..2079046 (+) 2262 WP_002258690.1 type IV pilus secretin PilQ Machinery gene
  A6L51_RS10940 (A6L51_10940) - 2080224..2080736 (+) 513 WP_002219790.1 shikimate kinase -

Sequence


Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=191266 A6L51_RS10930 WP_002214522.1 2076221..2076766(+) (pilP) [Neisseria meningitidis strain M22828]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=191266 A6L51_RS10930 WP_002214522.1 2076221..2076766(+) (pilP) [Neisseria meningitidis strain M22828]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTAATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains


Predicted by InterproScan.

(22-163)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1


Multiple sequence alignment