Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6L51_RS08690 Genome accession   NZ_CP016672
Coordinates   1660121..1660786 (-) Length   221 a.a.
NCBI ID   WP_065826199.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22828     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1655121..1665786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L51_RS08670 (A6L51_08670) pilX 1657486..1657959 (-) 474 WP_002258540.1 PilX family type IV pilin Machinery gene
  A6L51_RS08675 (A6L51_08675) pilK 1657964..1658560 (-) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L51_RS08680 (A6L51_08680) pilJ 1658539..1659480 (-) 942 WP_065826198.1 PilW family protein Machinery gene
  A6L51_RS08685 (A6L51_08685) pilV 1659477..1660091 (-) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L51_RS08690 (A6L51_08690) pilH 1660121..1660786 (-) 666 WP_065826199.1 GspH/FimT family pseudopilin Machinery gene
  A6L51_RS08695 (A6L51_08695) dnaB 1661095..1662501 (-) 1407 WP_002220671.1 replicative DNA helicase -
  A6L51_RS08700 (A6L51_08700) - 1662664..1663251 (+) 588 WP_002258535.1 superoxide dismutase -
  A6L51_RS08705 (A6L51_08705) - 1663935..1664444 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L51_RS08710 (A6L51_08710) - 1664776..1665108 (-) 333 WP_002213854.1 hypothetical protein -
  A6L51_RS14975 - 1665153..1665260 (-) 108 Protein_1612 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24650.15 Da        Isoelectric Point: 9.7531

>NTDB_id=191256 A6L51_RS08690 WP_065826199.1 1660121..1660786(-) (pilH) [Neisseria meningitidis strain M22828]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NKCESGKKGQGMLAFGDKNGNKTYDGDAADVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTKD
QHLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNNRRTVCQYK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=191256 A6L51_RS08690 WP_065826199.1 1660121..1660786(-) (pilH) [Neisseria meningitidis strain M22828]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AATAAATGTGAATCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACAATA
GGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.455

99.548

0.851

Multiple sequence alignment