Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CA268_RS19285 Genome accession   NZ_CP021202
Coordinates   3706980..3708407 (+) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain Z1002     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3701980..3713407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA268_RS19250 (CA268_19210) yeeW 3702164..3702358 (+) 195 WP_000988600.1 DUF5983 family protein -
  CA268_RS30215 - 3702404..3702484 (+) 81 Protein_3484 hypothetical protein -
  CA268_RS31515 (CA268_19220) - 3702973..3703155 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CA268_RS19265 (CA268_19225) tmaR 3703256..3703585 (-) 330 WP_000450409.1 DUF496 family protein -
  CA268_RS19270 (CA268_19230) yeeA 3703757..3704815 (-) 1059 WP_001200890.1 FUSC family protein -
  CA268_RS19275 (CA268_19235) sbmC 3705013..3705486 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  CA268_RS19280 (CA268_19240) dacD 3705605..3706771 (-) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CA268_RS19285 (CA268_19245) sbcB 3706980..3708407 (+) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  CA268_RS19290 (CA268_19250) tsuB 3708450..3708677 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CA268_RS19295 (CA268_19255) tsuA 3708691..3709749 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  CA268_RS19300 (CA268_19260) plaP 3709928..3711286 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CA268_RS30220 yoeI 3711276..3711338 (-) 63 WP_010723108.1 membrane protein YoeI -
  CA268_RS19305 (CA268_19265) yeeY 3711553..3712482 (-) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  CA268_RS19310 (CA268_19270) yeeZ 3712528..3713352 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=191256 CA268_RS19285 WP_021523141.1 3706980..3708407(+) (sbcB) [Escherichia coli strain Z1002]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=191256 CA268_RS19285 WP_021523141.1 3706980..3708407(+) (sbcB) [Escherichia coli strain Z1002]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment