Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   A6L77_RS10760 Genome accession   NZ_CP016670
Coordinates   2069084..2069629 (+) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain M25087     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2064084..2074629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L77_RS10740 (A6L77_10740) - 2064153..2066549 (-) 2397 WP_002221477.1 penicillin-binding protein 1A -
  A6L77_RS10745 (A6L77_10745) pilM 2066701..2067816 (+) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  A6L77_RS10750 (A6L77_10750) pilN 2067819..2068418 (+) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  A6L77_RS10755 (A6L77_10755) - 2068419..2069066 (+) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  A6L77_RS10760 (A6L77_10760) pilP 2069084..2069629 (+) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  A6L77_RS10765 (A6L77_10765) pilQ 2069648..2071933 (+) 2286 WP_002214524.1 type IV pilus secretin PilQ Machinery gene
  A6L77_RS10770 (A6L77_10770) - 2072895..2073407 (+) 513 WP_002214526.1 shikimate kinase -
  A6L77_RS10775 (A6L77_10775) aroB 2073487..2074566 (+) 1080 WP_002221481.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=191180 A6L77_RS10760 WP_002214522.1 2069084..2069629(+) (pilP) [Neisseria meningitidis strain M25087]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=191180 A6L77_RS10760 WP_002214522.1 2069084..2069629(+) (pilP) [Neisseria meningitidis strain M25087]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains


Predicted by InterproScan.

(22-163)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1


Multiple sequence alignment