Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA593_RS17475 Genome accession   NZ_CP021175
Coordinates   3407377..3407853 (-) Length   158 a.a.
NCBI ID   WP_001186711.1    Uniprot ID   -
Organism   Escherichia coli strain 5CRE51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3402377..3412853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA593_RS28475 - 3402698..3402922 (-) 225 Protein_3219 transposase -
  CA593_RS17435 (CA593_17370) - 3403003..3403407 (+) 405 WP_000839179.1 transposase -
  CA593_RS17440 (CA593_17375) tnpB 3403404..3403751 (+) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  CA593_RS17445 (CA593_17380) - 3403800..3405339 (+) 1540 Protein_3222 IS66-like element ISEc22 family transposase -
  CA593_RS27785 - 3405770..3405850 (-) 81 Protein_3223 hypothetical protein -
  CA593_RS17450 (CA593_17385) - 3405950..3406098 (-) 149 Protein_3224 DUF5983 family protein -
  CA593_RS17455 (CA593_17390) - 3406095..3406472 (-) 378 WP_000854761.1 TA system toxin CbtA family protein -
  CA593_RS17460 (CA593_17395) - 3406562..3406930 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CA593_RS17470 (CA593_17405) - 3407093..3407314 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  CA593_RS17475 (CA593_17410) radC 3407377..3407853 (-) 477 WP_001186711.1 RadC family protein Machinery gene
  CA593_RS17480 (CA593_17415) - 3407868..3408341 (-) 474 WP_000855059.1 antirestriction protein -
  CA593_RS17490 (CA593_17425) - 3408683..3409501 (-) 819 WP_001234729.1 DUF932 domain-containing protein -
  CA593_RS17500 (CA593_17435) - 3409619..3409814 (-) 196 Protein_3231 DUF905 family protein -
  CA593_RS17505 (CA593_17440) - 3409885..3412731 (-) 2847 WP_033545654.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17603.23 Da        Isoelectric Point: 7.6151

>NTDB_id=191005 CA593_RS17475 WP_001186711.1 3407377..3407853(-) (radC) [Escherichia coli strain 5CRE51]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=191005 CA593_RS17475 WP_001186711.1 3407377..3407853(-) (radC) [Escherichia coli strain 5CRE51]
ATGCAGCAGCTTTCCTTTCTGCCCGGCGCGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGGC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment