Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CA593_RS17395 Genome accession   NZ_CP021175
Coordinates   3394907..3396334 (-) Length   475 a.a.
NCBI ID   WP_086353627.1    Uniprot ID   -
Organism   Escherichia coli strain 5CRE51     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3389907..3401334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA593_RS17370 (CA593_17305) yeeZ 3389962..3390786 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CA593_RS17375 (CA593_17310) yeeY 3390832..3391761 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  CA593_RS27775 yoeI 3391976..3392038 (+) 63 WP_010723108.1 membrane protein YoeI -
  CA593_RS17380 (CA593_17315) plaP 3392028..3393386 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CA593_RS17385 (CA593_17320) tsuA 3393565..3394623 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  CA593_RS17390 (CA593_17325) tsuB 3394637..3394864 (+) 228 WP_000985272.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CA593_RS17395 (CA593_17330) sbcB 3394907..3396334 (-) 1428 WP_086353627.1 exodeoxyribonuclease I Machinery gene
  CA593_RS17400 (CA593_17335) dacD 3396543..3397709 (+) 1167 WP_001352246.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CA593_RS17405 (CA593_17340) - 3397836..3399056 (-) 1221 WP_000343760.1 ISL3-like element ISKox3 family transposase -
  CA593_RS17410 (CA593_17345) sbmC 3399152..3399625 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  CA593_RS17415 (CA593_17350) yeeA 3399824..3400882 (+) 1059 WP_001200892.1 FUSC family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54443.77 Da        Isoelectric Point: 5.7523

>NTDB_id=191004 CA593_RS17395 WP_086353627.1 3394907..3396334(-) (sbcB) [Escherichia coli strain 5CRE51]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPKDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=191004 CA593_RS17395 WP_086353627.1 3394907..3396334(-) (sbcB) [Escherichia coli strain 5CRE51]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGAAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment