Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CA593_RS13565 Genome accession   NZ_CP021175
Coordinates   2625875..2626390 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 5CRE51     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620875..2631390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA593_RS13540 (CA593_13475) yqaB 2621769..2622137 (+) 369 Protein_2484 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CA593_RS13545 (CA593_13480) - 2622230..2623458 (+) 1229 WP_088895425.1 IS3-like element IS2 family transposase -
  CA593_RS13550 (CA593_13485) - 2623468..2623671 (+) 204 Protein_2486 HAD-IA family hydrolase -
  CA593_RS13555 (CA593_13490) yqaA 2623668..2624096 (+) 429 WP_001287454.1 YqaA family protein -
  CA593_RS13560 (CA593_13495) gshA 2624169..2625725 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  CA593_RS13565 (CA593_13500) luxS 2625875..2626390 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CA593_RS13570 (CA593_13505) emrB 2626454..2627992 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CA593_RS13575 (CA593_13510) emrA 2628009..2629181 (-) 1173 WP_020233875.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CA593_RS13580 (CA593_13515) emrR 2629308..2629838 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CA593_RS13585 (CA593_13520) ygaH 2629929..2630264 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CA593_RS13590 (CA593_13525) ygaZ 2630254..2630991 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=190993 CA593_RS13565 WP_001130211.1 2625875..2626390(+) (luxS) [Escherichia coli strain 5CRE51]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=190993 CA593_RS13565 WP_001130211.1 2625875..2626390(+) (luxS) [Escherichia coli strain 5CRE51]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment