Detailed information NTG0190990

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA593_RS13245
• Genome accession: NZ_CP021175
• Coordinates: 2567779..2568771 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 5CRE51
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2562779..2573771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA593_RS13215 (CA593_13150)	ispD	2562840..2563550 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CA593_RS13220 (CA593_13155)	ispF	2563550..2564029 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CA593_RS13225 (CA593_13160)	truD	2564026..2565075 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
CA593_RS13230 (CA593_13165)	surE	2565056..2565817 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CA593_RS13235 (CA593_13170)	pcm	2565811..2566437 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CA593_RS13240 (CA593_13175)	nlpD	2566622..2567716 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CA593_RS13245 (CA593_13180)	rpoS	2567779..2568771 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CA593_RS13250 (CA593_13185)	-	2568892..2569299 (-)	408	WP_001521151.1	MarR family transcriptional regulator	-
CA593_RS13255 (CA593_13190)	-	2569446..2570039 (+)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CA593_RS13260 (CA593_13195)	-	2570039..2571466 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CA593_RS13265 (CA593_13200)	-	2571477..2571713 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CA593_RS13270 (CA593_13205)	ygbN	2571752..2573116 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=190990 CA593_RS13245 WP_000081550.1 2567779..2568771(+) (rpoS) [Escherichia coli strain 5CRE51]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=190990 CA593_RS13245 WP_000081550.1 2567779..2568771(+) (rpoS) [Escherichia coli strain 5CRE51]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715