Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA593_RS07930 Genome accession   NZ_CP021175
Coordinates   1552771..1553439 (+) Length   222 a.a.
NCBI ID   WP_001336353.1    Uniprot ID   -
Organism   Escherichia coli strain 5CRE51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1547771..1558439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA593_RS07895 (CA593_07855) yicC 1547791..1548654 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  CA593_RS07905 (CA593_07865) rph 1548781..1549497 (+) 717 WP_001247093.1 ribonuclease PH -
  CA593_RS07910 (CA593_07870) pyrE 1549562..1550203 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CA593_RS07915 (CA593_07875) slmA 1550240..1550836 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CA593_RS07920 (CA593_07880) dut 1550943..1551401 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CA593_RS07925 (CA593_07885) coaBC 1551379..1552599 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA593_RS07930 (CA593_07890) radC 1552771..1553439 (+) 669 WP_001336353.1 DNA repair protein RadC Machinery gene
  CA593_RS07935 (CA593_07895) rpmB 1553656..1553892 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CA593_RS07940 (CA593_07900) rpmG 1553913..1554080 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CA593_RS07945 (CA593_07905) mutM 1554178..1554987 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CA593_RS07950 (CA593_07910) coaD 1555026..1555505 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CA593_RS07955 (CA593_07915) waaA 1555513..1556790 (-) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CA593_RS07960 (CA593_07920) rfaQ 1557197..1558267 (+) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25290.41 Da        Isoelectric Point: 7.8777

>NTDB_id=190972 CA593_RS07930 WP_001336353.1 1552771..1553439(+) (radC) [Escherichia coli strain 5CRE51]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=190972 CA593_RS07930 WP_001336353.1 1552771..1553439(+) (radC) [Escherichia coli strain 5CRE51]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment