Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   B9N48_RS18340 Genome accession   NZ_CP021169
Coordinates   3501085..3502218 (-) Length   377 a.a.
NCBI ID   WP_086344416.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3496085..3507218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS18305 ywnA 3496270..3496671 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  B9N48_RS18310 ureC 3496806..3498515 (-) 1710 WP_086344415.1 urease subunit alpha -
  B9N48_RS18315 ureB 3498512..3498886 (-) 375 WP_015251023.1 urease subunit beta -
  B9N48_RS18320 ureA 3498883..3499200 (-) 318 WP_003227724.1 urease subunit gamma -
  B9N48_RS18325 - 3499381..3499545 (-) 165 WP_150132542.1 hypothetical protein -
  B9N48_RS21075 - 3499764..3499976 (-) 213 Protein_3551 urea ABC transporter substrate-binding protein -
  B9N48_RS18330 csbD 3500189..3500377 (-) 189 WP_003227718.1 stress response protein CsbD -
  B9N48_RS18335 - 3500450..3500929 (-) 480 WP_003244390.1 hypothetical protein -
  B9N48_RS18340 rapC 3501085..3502218 (-) 1134 WP_086344416.1 response regulator aspartate phosphatase RapB Regulator
  B9N48_RS18350 moaA 3502410..3503435 (-) 1026 WP_086344417.1 GTP 3',8-cyclase MoaA -
  B9N48_RS18355 fdhD 3503451..3504239 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  B9N48_RS18360 - 3504484..3504645 (-) 162 WP_014478245.1 hypothetical protein -
  B9N48_RS18365 ywmD 3504740..3505414 (-) 675 WP_003243553.1 VWA domain-containing protein -
  B9N48_RS20730 - 3505467..3505607 (-) 141 WP_144486784.1 hypothetical protein -
  B9N48_RS18375 ywmC 3505738..3506421 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.18 Da        Isoelectric Point: 4.7975

>NTDB_id=190839 B9N48_RS18340 WP_086344416.1 3501085..3502218(-) (rapC) [Bacillus subtilis strain TLO3]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
ADYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=190839 B9N48_RS18340 WP_086344416.1 3501085..3502218(-) (rapC) [Bacillus subtilis strain TLO3]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGATTACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.895

100

0.432
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424