Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   B9N48_RS08890 Genome accession   NZ_CP021169
Coordinates   1692766..1693197 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain TLO3     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687766..1698197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS08870 spoVS 1688328..1688588 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  B9N48_RS08875 tdh 1688853..1689896 (+) 1044 WP_049140039.1 L-threonine 3-dehydrogenase -
  B9N48_RS08880 kbl 1689909..1691087 (+) 1179 WP_086343849.1 glycine C-acetyltransferase -
  B9N48_RS08885 miaB 1691235..1692764 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  B9N48_RS08890 ymcA 1692766..1693197 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  B9N48_RS08895 cotE 1693459..1694004 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  B9N48_RS08900 hexA 1694138..1696714 (+) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=190775 B9N48_RS08890 WP_003231834.1 1692766..1693197(+) (ymcA) [Bacillus subtilis strain TLO3]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=190775 B9N48_RS08890 WP_003231834.1 1692766..1693197(+) (ymcA) [Bacillus subtilis strain TLO3]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAGGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment