Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L93_RS09040 Genome accession   NZ_CP016661
Coordinates   1757546..1758139 (-) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25438     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1752546..1763139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L93_RS14730 - 1752665..1752790 (-) 126 Protein_1673 IS5/IS1182 family transposase -
  A6L93_RS09020 (A6L93_09020) dapC 1752878..1754065 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6L93_RS09025 (A6L93_09025) dut 1754141..1754593 (-) 453 WP_002220679.1 dUTP diphosphatase -
  A6L93_RS09030 (A6L93_09030) - 1754736..1755164 (+) 429 Protein_1676 AzlC family ABC transporter permease -
  A6L93_RS09035 (A6L93_09035) pilX 1757068..1757541 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L93_RS09040 (A6L93_09040) pilK 1757546..1758139 (-) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L93_RS09045 (A6L93_09045) pilJ 1758118..1759056 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L93_RS09050 (A6L93_09050) pilV 1759053..1759664 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L93_RS09055 (A6L93_09055) pilH 1759688..1760365 (-) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L93_RS09060 (A6L93_09060) dnaB 1760520..1761926 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6L93_RS09065 (A6L93_09065) - 1762089..1762676 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=190751 A6L93_RS09040 WP_002248275.1 1757546..1758139(-) (pilK) [Neisseria meningitidis strain M25438]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=190751 A6L93_RS09040 WP_002248275.1 1757546..1758139(-) (pilK) [Neisseria meningitidis strain M25438]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment