Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   B9N48_RS03645 Genome accession   NZ_CP021169
Coordinates   702148..703278 (+) Length   376 a.a.
NCBI ID   WP_015715464.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 697148..708278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS03625 rlmD 698139..699515 (+) 1377 WP_086343540.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  B9N48_RS03630 - 699519..699822 (-) 304 Protein_661 hypothetical protein -
  B9N48_RS03635 - 700048..700909 (-) 862 Protein_662 T7SS effector LXG polymorphic toxin -
  B9N48_RS03640 - 701015..701983 (+) 969 WP_350308377.1 hypothetical protein -
  B9N48_RS03645 rapC 702148..703278 (+) 1131 WP_015715464.1 response regulator aspartate phosphatase RapH Regulator
  B9N48_RS03650 phrH 703268..703441 (+) 174 WP_024571797.1 phosphatase RapH inhibitor PhrH -
  B9N48_RS03655 yeeI 703601..704320 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  B9N48_RS03660 yeeK 704454..704894 (+) 441 WP_086343542.1 spore coat protein YeeK -
  B9N48_RS03665 yezE 705009..705593 (+) 585 WP_086343543.1 TetR/AcrR family transcriptional regulator -
  B9N48_RS03670 yesE 705672..706115 (+) 444 WP_086343544.1 nuclear transport factor 2 family protein -
  B9N48_RS03675 - 706112..706844 (+) 733 Protein_670 NAD-dependent epimerase/dehydratase family protein -
  B9N48_RS03680 cotJA 706991..707239 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  B9N48_RS03685 cotJB 707223..707486 (+) 264 WP_003219491.1 spore coat protein CotJB -
  B9N48_RS03690 cotJC 707501..708070 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43977.24 Da        Isoelectric Point: 5.7157

>NTDB_id=190727 B9N48_RS03645 WP_015715464.1 702148..703278(+) (rapC) [Bacillus subtilis strain TLO3]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=190727 B9N48_RS03645 WP_015715464.1 702148..703278(+) (rapC) [Bacillus subtilis strain TLO3]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402