Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L46_RS14280 Genome accession   NZ_CP016660
Coordinates   1555124..1555588 (-) Length   154 a.a.
NCBI ID   WP_164967097.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22804     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550124..1560588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L46_RS08025 (A6L46_08025) - 1550469..1551926 (+) 1458 WP_002258745.1 VWA domain-containing protein -
  A6L46_RS12775 - 1551963..1552714 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  A6L46_RS08045 (A6L46_08045) - 1553128..1553601 (-) 474 Protein_1487 transposase -
  A6L46_RS08050 (A6L46_08050) - 1553833..1554045 (+) 213 WP_002224145.1 SWIM zinc finger family protein -
  A6L46_RS14895 (A6L46_08055) - 1554229..1554497 (+) 269 Protein_1489 5'-nucleotidase -
  A6L46_RS08060 (A6L46_08060) comP 1554587..1555036 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  A6L46_RS14280 comE 1555124..1555588 (-) 465 WP_164967097.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16442.72 Da        Isoelectric Point: 10.7894

>NTDB_id=190717 A6L46_RS14280 WP_164967097.1 1555124..1555588(-) (comE) [Neisseria meningitidis strain M22804]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=190717 A6L46_RS14280 WP_164967097.1 1555124..1555588(-) (comE) [Neisseria meningitidis strain M22804]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment