Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   B9N48_RS00335 Genome accession   NZ_CP021169
Coordinates   60231..60461 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain TLO3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55231..65461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS00305 ridA 55395..55772 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  B9N48_RS00310 spoVG 55967..56260 (+) 294 WP_003218346.1 septation regulator SpoVG -
  B9N48_RS00315 glmU 56453..57823 (+) 1371 WP_077671689.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  B9N48_RS00320 prsS 57846..58799 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  B9N48_RS00325 rplYB 58884..59498 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  B9N48_RS00330 pth 59605..60171 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  B9N48_RS00335 subA/fin 60231..60461 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  B9N48_RS00340 mfd 60531..64064 (+) 3534 WP_077671688.1 transcription-repair coupling factor -
  B9N48_RS00345 spoVT 64200..64736 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=190707 B9N48_RS00335 WP_003243417.1 60231..60461(+) (subA/fin) [Bacillus subtilis strain TLO3]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=190707 B9N48_RS00335 WP_003243417.1 60231..60461(+) (subA/fin) [Bacillus subtilis strain TLO3]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment