Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CAY59_RS16370 Genome accession   NZ_CP021145
Coordinates   3450827..3451501 (-) Length   224 a.a.
NCBI ID   WP_038890943.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3445827..3456501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS16335 (CAY59_16150) coaD 3446235..3446735 (+) 501 WP_045368180.1 pantetheine-phosphate adenylyltransferase -
  CAY59_RS16340 (CAY59_16155) - 3446763..3447743 (+) 981 WP_086369786.1 glycosyltransferase -
  CAY59_RS16345 (CAY59_16160) - 3447764..3448528 (+) 765 WP_086369787.1 glycosyltransferase family 25 protein -
  CAY59_RS16350 (CAY59_16165) mutM 3448535..3449345 (-) 811 Protein_3000 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CAY59_RS16355 (CAY59_16170) - 3449449..3449925 (-) 477 WP_045420047.1 hypothetical protein -
  CAY59_RS16360 (CAY59_16175) rpmG 3450103..3450273 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  CAY59_RS16365 (CAY59_16180) rpmB 3450287..3450523 (-) 237 WP_005384783.1 50S ribosomal protein L28 -
  CAY59_RS16370 (CAY59_16185) radC 3450827..3451501 (-) 675 WP_038890943.1 DNA repair protein RadC Machinery gene
  CAY59_RS16375 (CAY59_16190) - 3451615..3453288 (-) 1674 WP_077201176.1 methyl-accepting chemotaxis protein -
  CAY59_RS16385 (CAY59_16195) coaBC 3453496..3454695 (+) 1200 WP_077201177.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CAY59_RS16390 (CAY59_16200) slmA 3454856..3455446 (+) 591 WP_005434407.1 nucleoid occlusion factor SlmA -
  CAY59_RS16395 (CAY59_16205) - 3455452..3456402 (+) 951 WP_086369788.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25324.07 Da        Isoelectric Point: 6.8490

>NTDB_id=190695 CAY59_RS16370 WP_038890943.1 3450827..3451501(-) (radC) [Vibrio campbellii strain LA16-V1]
MTLKTLPNESMPREKLLNRGPQALSDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEKEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=190695 CAY59_RS16370 WP_038890943.1 3450827..3451501(-) (radC) [Vibrio campbellii strain LA16-V1]
ATGACACTGAAAACCTTGCCCAACGAGTCCATGCCAAGAGAGAAATTGCTTAACCGCGGACCACAAGCGTTGTCGGATGC
CGAATTACTGGCTATTTTTCTGCGCACTGGAACGCAAGGTATGAACGTCATCGAATTAGCCGACTTTCTGATCCAAGACT
TTGGATCGCTTCGCCAGTTGTTTTCTGCTTCAGAGAAAGAGTTTTGCCAACATAAAGGGTTAGGGCAAGCGAAATACGTG
CAGTTACAAGCCGTTTTGGAAATGACGCAACGCTATTTAGCCGAGACATTAAAGCGTGGTGATGCGTTAACCAGCCCAGA
ACAAACCAAACTTTATCTTTCTTCTATATTAAGAGACCGACAAAGAGAGGCTTTTTACATTCTTTTCTTAGATAACCAAC
ATCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACACTCGATGCTGCATCGGTTTATCCGAGAGAAGTCGTCAAACGC
GCCTTGCACCACAACGCCGCTGCATTGATTTTGGCTCACAATCACCCGTCAGGTGTGGCGGAACCTAGCCAAGCAGATAG
AAGGATTACCCGGCGTTTAATCGACGCTTTAGCGCTGGTGGATATTCGAATTTTGGACCATTTCGTTATCGGAGATGGGG
AAAGCGTCTCTTTTGCCGAAAGAGGTTGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

52.535

96.875

0.509
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.384

Multiple sequence alignment